findSubcommunities: Increase resolution for a specific set of clusters

In conos: Clustering on Network of Samples

Increase resolution for a specific set of clusters

Description

Increase resolution for a specific set of clusters

Usage

findSubcommunities(
  con,
  target.clusters,
  clustering = NULL,
  groups = NULL,
  method = leiden.community,
  ...
)

Arguments

con	conos object
target.clusters	clusters for which the resolution should be increased
clustering	name of clustering in the conos object to use. Either 'clustering' or 'groups' must be provided (default=NULL).
groups	set of clusters to use. Ignored if 'clustering' is not NULL (default=NULL).
method	function, used to find communities (default=leiden.community).
...	additional params passed to the community function

Value

set of clusters with increased resolution

conos documentation built on May 29, 2024, 9:56 a.m.