filter.genes.by.cluster.expression: Filter genes by requiring minimum average expression within...

In conos: Clustering on Network of Samples

Filter genes by requiring minimum average expression within at least one of the provided cell clusters

Description

Filter genes by requiring minimum average expression within at least one of the provided cell clusters

Usage

filter.genes.by.cluster.expression(
  emat,
  clusters,
  min.max.cluster.average = 0.1
)

Arguments

emat	spliced (exonic) count matrix
clusters	named cell factor defining clusters
min.max.cluster.average	numeric Required minimum average expression count (no normalization is perfomed) (default=0.1)

Value

filtered emat matrix

conos documentation built on May 29, 2024, 9:56 a.m.