getClusterRelationshipConsistency: Evaluate consistency of cluster relationships Using the...

View source: R/conos.R

getClusterRelationshipConsistencyR Documentation

Evaluate consistency of cluster relationships Using the clustering we are generating per-sample dendrograms and we are examining their similarity between different samples More information about similarity measures <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_cophenetic> <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_bakers_gamma>

Description

Evaluate consistency of cluster relationships Using the clustering we are generating per-sample dendrograms and we are examining their similarity between different samples More information about similarity measures <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_cophenetic> <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_bakers_gamma>

Usage

getClusterRelationshipConsistency(p2list, pjc)

Arguments

p2list

list of pagoda2 object

pjc

a clustering factor

Value

list of cophenetic and bakers_gama similarities of the dendrograms from each sample


conos documentation built on April 12, 2022, 1:06 a.m.