getClusterRelationshipConsistency: Evaluate consistency of cluster relationships Using the...
In conos: Clustering on Network of Samples
getClusterRelationshipConsistency R Documentation
Evaluate consistency of cluster relationships
Using the clustering we are generating per-sample dendrograms
and we are examining their similarity between different samples
More information about similarity measures
<https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_cophenetic>
<https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_bakers_gamma>
Description
Evaluate consistency of cluster relationships
Using the clustering we are generating per-sample dendrograms
and we are examining their similarity between different samples
More information about similarity measures
<https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_cophenetic>
<https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_bakers_gamma>
Usage
getClusterRelationshipConsistency(p2list, pjc)
Arguments
p2list
list of pagoda2 object
pjc
a clustering factor
Value
list of cophenetic and bakers_gama similarities of the dendrograms from each sample
conos documentation built on May 29, 2024, 9:56 a.m.
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| getClusterRelationshipConsistency | R Documentation |
Evaluate consistency of cluster relationships Using the clustering we are generating per-sample dendrograms and we are examining their similarity between different samples More information about similarity measures <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_cophenetic> <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_bakers_gamma>
Description
Evaluate consistency of cluster relationships Using the clustering we are generating per-sample dendrograms and we are examining their similarity between different samples More information about similarity measures <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_cophenetic> <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_bakers_gamma>
Usage
getClusterRelationshipConsistency(p2list, pjc)
Arguments
p2list |
list of pagoda2 object |
pjc |
a clustering factor |
Value
list of cophenetic and bakers_gama similarities of the dendrograms from each sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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