quickCPCA: Perform cpca on two samples

In conos: Clustering on Network of Samples

Description

Perform cpca on two samples

Usage

quickCPCA(
  r.n,
  data.type = "counts",
  ncomps = 100,
  n.odgenes = NULL,
  var.scale = TRUE,
  verbose = TRUE,
  score.component.variance = FALSE
)

Arguments

r.n	list of pagoda2 objects
data.type	character Type of data type in the input pagoda2 objects within r.n (default='counts')
ncomps	numeric Number of components to calculate (default=100)
n.odgenes	numeric Number of overdispersed genes to take from each dataset (default=NULL)
var.scale	boolean Whether to scale variance (default=TRUE)
verbose	boolean Whether to be verbose (default=TRUE)
score.component.variance	boolean Whether to score component variance (default=FALSE)

Value

cpca projection on two samples

conos documentation built on Feb. 23, 2021, 9:06 a.m.