getPercentGlobalClusters: Evaluate how many clusters are global

Description Usage Arguments Value

View source: R/conos.R

Description

Evaluate how many clusters are global

Usage

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getPercentGlobalClusters(
  p2list,
  pjc,
  pc.samples.cutoff = 0.9,
  min.cell.count.per.sample = 10
)

Arguments

p2list

list of pagoda2 object on which clustering was generated

pjc

the result of joint clustering

pc.samples.cutoff

numeric The percent of the number of the total samples that a cluster has to span to be considered global (default=0.9)

min.cell.count.per.samples

numeric The minimum number of cells of cluster in sample to be considered as represented in that sample (default=10)

Value

percent of clusters that are global given the above criteria


conos documentation built on Feb. 23, 2021, 9:06 a.m.