bestClusterTreeThresholds: Find threshold of cluster detectability in trees of clusters
In conos: Clustering on Network of Samples

bestClusterTreeThresholds

R Documentation

Find threshold of cluster detectability in trees of clusters

Description

For a given clustering, walks the walktrap (of clusters) result tree to find a subtree with max(min(sens,spec)) for each cluster, where sens is sensitivity, spec is specificity

Usage

bestClusterTreeThresholds(res, leaf.factor, clusters, clmerges = NULL)

Arguments

`res`	walktrap result object (igraph) where the nodes were clusters
`leaf.factor`	a named factor describing cell assignments to the leaf nodes (in the same order as res$names)
`clusters`	cluster factor
`clmerges`	integer matrix of cluster merges (default=NULL). If NULL, the function treeJaccard() performs calculation without it.