plotClusterBarplots: Plots barplots per sample of composition of each pagoda2...

In conos: Clustering on Network of Samples

Plots barplots per sample of composition of each pagoda2 application based on selected clustering

Description

Plots barplots per sample of composition of each pagoda2 application based on selected clustering

Usage

plotClusterBarplots(
  conos.obj = NULL,
  clustering = NULL,
  groups = NULL,
  sample.factor = NULL,
  show.entropy = TRUE,
  show.size = TRUE,
  show.composition = TRUE,
  legend.height = 0.2
)

Arguments

conos.obj	A conos object (default=NULL)
clustering	name of clustering in the current object (default=NULL)
groups	arbitrary grouping of cells (to use instead of the clustering) (default=NULL)
sample.factor	a factor describing cell membership in the samples (or some other category) (default=NULL). This will default to samples if not provided.
show.entropy	boolean Whether to include entropy barplot (default=TRUE)
show.size	boolean Whether to include size barplot (default=TRUE)
show.composition	boolean Whether to include composition barplot (default=TRUE)
legend.height	numeric Relative hight of the legend panel (default=0.2)

Value

a ggplot object

conos documentation built on May 29, 2024, 9:56 a.m.