Files in conos
Clustering on Network of Samples

.Rinstignore
MD5
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R R/largeVis.R R/data.R R/conclass.R R/communities.R R/conos.R R/de_functions.R R/graph_embedding.R R/plot.R R/integrations.R R/access_wrappers.R
src/Makevars.win
src/Makevars
src/RcppExports.cpp
src/edge_rebalancing.cpp
src/propagate_labels.cpp
src/Rjnmf.cpp
src/deltacut.cpp
src/spColSum.cpp
src/edgeweights.cpp
src/gradients.cpp
src/spcov.cpp
src/adjustedRand.c
src/cpca.cpp
src/checkfunctions.cpp
src/edgeFilter.cpp
src/graph_embedding.cpp
src/largeVis.cpp
src/include/alias.h
src/include/largeVis.h
src/include/gradients.h
inst/conos_logo.png
inst/scanpy_integration.ipynb
inst/COPYRIGHTS
inst/extdata/cellannot.txt
tests/testthat.R tests/testthat/test_functions.R
data/small_panel.preprocessed.rda
man/quickCCA.Rd man/getCellNames.Rd man/collapseCellsByType.Rd man/saveConosForScanPy.Rd man/namedLevels.Rd man/getPercentGlobalClusters.Rd man/getClusterRelationshipConsistency.Rd man/getBetweenCellTypeCorrectedDE.Rd man/basicSeuratProc.Rd man/buildWijMatrix.Rd man/getGenes.Rd man/reexports.Rd man/getGlobalClusterMarkers.Rd man/plotSamples.Rd man/quickPlainPCA.Rd man/plotEmbeddings.Rd man/convertToPagoda2.Rd man/multitrap.community.Rd man/getClusteringGroups.Rd man/saveDEasJSON.Rd man/getEmbedding.Rd man/getPca.Rd man/getOdGenesUniformly.Rd man/estimateWeightEntropyPerCell.Rd man/edgeMat.Rd man/stableTreeClusters.Rd man/sgdBatches.Rd man/p2app4conos.Rd man/plotClusterBarplots.Rd man/propagateLabelsDiffusion.Rd man/small_panel.preprocessed.Rd man/getBetweenCellTypeDE.Rd man/getNeighborMatrix.Rd man/quickCPCA.Rd man/getClustering.Rd man/checkCountsWholeNumbers.Rd man/getPerCellTypeDE.Rd man/greedyModularityCut.Rd man/namedNames.Rd man/saveDEasCSV.Rd man/findSubcommunities.Rd man/plotDEheatmap.Rd man/getGeneExpression.Rd man/bestClusterThresholds.Rd man/rawMatricesWithCommonGenes.Rd man/getSampleNamePerCell.Rd man/Conos.Rd man/getOverdispersedGenes.Rd man/multimulti.community.Rd man/getRawCountMatrix.Rd man/plotComponentVariance.Rd man/getCountMatrix.Rd man/projectKNNs.Rd man/plotClusterBoxPlotsByAppType.Rd man/scanKModularity.Rd man/bestClusterTreeThresholds.Rd
conos documentation built on Feb. 23, 2021, 9:06 a.m.