scanKModularity | R Documentation |
Scan joint graph modularity for a range of k (or k.self) values Builds graph with different values of k (or k.self if scan.k.self=TRUE), evaluating modularity of the resulting multilevel clustering NOTE: will run evaluations in parallel using con$n.cores (temporarily setting con$n.cores to 1 in the process)
scanKModularity( con, min = 3, max = 50, by = 1, scan.k.self = FALSE, omit.internal.edges = TRUE, verbose = TRUE, plot = TRUE, ... )
con |
Conos object to test |
min |
numeric Minimal value of k to test (default=3) |
max |
numeric Value of k to test (default=50) |
by |
numeric Scan step (default=1) |
scan.k.self |
boolean Whether to test dependency on scan.k.self (default=FALSE) |
omit.internal.edges |
boolean Whether to omit internal edges of the graph (default=TRUE) |
verbose |
boolean Whether to provide verbose output (default=TRUE) |
plot |
boolean Whether to plot the output (default=TRUE) |
... |
other parameters will be passed to con$buildGraph() |
a data frame with $k $m columns giving k and the corresponding modularity
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