bestClusterThresholds: Find threshold of cluster detectability
In conos: Clustering on Network of Samples
bestClusterThresholds R Documentation
Find threshold of cluster detectability
Description
For a given clustering, walks the walktrap result tree to find
a subtree with max(min(sens,spec)) for each cluster, where sens is sensitivity, spec is specificity
Usage
bestClusterThresholds(res, clusters, clmerges = NULL)
Arguments
res
walktrap result object (igraph)
clusters
cluster factor
clmerges
integer matrix of cluster merges (default=NULL). If NULL, the function treeJaccard() performs calculation without it.
Value
a list of $thresholds - per cluster optimal detectability values, and $node - internal node id (merge row) where the optimum was found
conos documentation built on May 29, 2024, 9:56 a.m.
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| bestClusterThresholds | R Documentation |
Find threshold of cluster detectability
Description
For a given clustering, walks the walktrap result tree to find a subtree with max(min(sens,spec)) for each cluster, where sens is sensitivity, spec is specificity
Usage
bestClusterThresholds(res, clusters, clmerges = NULL)
Arguments
res |
walktrap result object (igraph) |
clusters |
cluster factor |
clmerges |
integer matrix of cluster merges (default=NULL). If NULL, the function treeJaccard() performs calculation without it. |
Value
a list of $thresholds - per cluster optimal detectability values, and $node - internal node id (merge row) where the optimum was found
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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