Tutorials Reference documentation
dynwrap contains the code for a common model of single-cell trajectories. The package can:
Documentation and the API reference for dynwrap can be found at the dyvnerse documentation website: https://dynverse.org/ .
dynwrap was used to wrap 50+ trajectory inference method within docker containers in dynmethods.
The advantage of using a common model is that it allows:
Check out news(package = "dynwrap")
or NEWS.md for a full
list of changes.
MAJOR CHANGE convert_milestone_percentages_to_progressions()
:
Rewrite implementation to attain significant speedup.
MINOR CHANGE infer_trajectory()
: Infer command (Rscript/python)
from file extension if possible and avoid using shebang to execute
script, because R CMD check for R 4.0 puts Rscript and R dummy
executables on the path before R CMD check. This means
#!/usr/bin/env Rscript
does not work anymore.
MINOR CHANGE add_feature_importance()
: Add a function for adding
feature importance scores to a trajectory.
BUG FIX project_waypoints()
: Rename milestone waypoints such that
the names are unique.
BUG FIX infer_trajectory()
: Fix error message printing.
BUG FIX: dyndimred
is used conditionally.
BUG FIX: wrap_expression()
and add_expression()
: Do not override
feature_info when it already exists in dataset.
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