View source: R/wrap_add_cyclic_trajectory.R
add_cyclic_trajectory | R Documentation |
The pseudotime is divided into three equally sized segments, and are placed within a trajectory in the form A -> B -> C -> A
add_cyclic_trajectory(
dataset,
pseudotime,
directed = FALSE,
do_scale_minmax = TRUE,
...
)
dataset |
A dataset created by |
pseudotime |
A named vector of pseudo times. |
directed |
Whether or not the directionality of the pseudotime is predicted. |
do_scale_minmax |
Whether or not to scale the pseudotime between 0 and 1. Otherwise, will assume the values are already within that range. |
... |
extra information to be stored in the wrapper. |
A trajectory object
library(tibble)
dataset <- wrap_data(cell_ids = letters)
pseudotime <- tibble(cell_id = dataset$cell_ids, pseudotime = runif(length(dataset$cell_ids)))
pseudotime
trajectory <- add_cyclic_trajectory(dataset, pseudotime)
# for plotting the result, install dynplot
#- dynplot::plot_graph(trajectory)
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