create_ti_method_definition: Create a TI method from a local method definition file

In dynwrap: Representing and Inferring Single-Cell Trajectories

Create a TI method from a local method definition file

Description

The local method definition file describes a method that is runnable on the local system. See vignette("create_ti_method_definition", "dynwrap") for a tutorial on how to create a containerized TI method.

Usage

create_ti_method_definition(definition, script, return_function = TRUE)

Arguments

definition	A definition, see definition()
script	Location of the script that will be executed. Has to contain a #!
return_function	Whether to return a function that allows you to override the default parameters, or just return the method meta data as is.

Value

A method definition

Examples

# See the vignette "create_ti_method_definition" to get a good idea on how
# to use this function.

# create a definition.yaml file and a run.R/py script.
# method <- create_ti_method_definition("definition.yml", "run.R")
# trajectory <- infer_trajectory(example_dataset, method(), verbose = TRUE)

dynwrap documentation built on July 26, 2023, 5:15 p.m.