def_wrapper: Meta information on the wrapper

In dynwrap: Representing and Inferring Single-Cell Trajectories

Meta information on the wrapper

Description

Meta information on the wrapper

Usage

def_wrapper(
  input_required,
  input_optional = character(),
  type = "trajectory",
  topology_inference = NULL,
  trajectory_types = character()
)

Arguments

input_required	The required inputs for this method. See dynwrap::allowed_inputs().
input_optional	Optional inputs for this method. See dynwrap::allowed_inputs().
type	Which type of trajectory post-processing is used. Possible values: "trajectory" (default), "linear_trajectory", "cyclic_trajectory", "branch_trajectory", "cluster_graph", "dimred_projection", "end_state_probabilities", "cell_graph".
topology_inference	Whether the topology is fixed ("fixed"), free ("free"), or fixed by a parameter provided to the algorithm ("param").
trajectory_types	The possible trajectory types this method can return. Must be a subset of c("cyclic", "linear", "bifurcation", "convergence", "multifurcation", "tree", "graph", "acyclic_graph", "disconnected_graph")

Examples

def_wrapper(
  input_required = c("expression", "start_id"),
  input_optional = "groups_n",
  type = "dimred_projection",
  trajectory_types = c("linear", "cyclic"),
  topology_inference = "free"
)

dynwrap documentation built on July 26, 2023, 5:15 p.m.