add_regulatory_network: Add a GRN to a dynwrap object

In dynwrap: Representing and Inferring Single-Cell Trajectories

Add a GRN to a dynwrap object

Description

Add a GRN to a dynwrap object

Usage

add_regulatory_network(
  dataset,
  regulatory_network,
  regulatory_network_sc = NULL,
  regulators = NULL,
  targets = NULL,
  ...
)

Arguments

dataset	A dataset created by wrap_data() or wrap_expression()
regulatory_network	A data frame consisting of three columns: "regulator", "target", "strength".
regulatory_network_sc	A data frame consisting of four columns: "cell_id", "regulator", "target", "strength".
regulators	The feature ids of the regulators.
targets	The feature ids of the targets.
...	Extra arguments to be saved in the model.

Value

A dynwrap object with the regulatory network added.

dynwrap documentation built on July 26, 2023, 5:15 p.m.