add_pseudotime: Add or calculate pseudotime as distance from the root

In dynwrap: Representing and Inferring Single-Cell Trajectories

Add or calculate pseudotime as distance from the root

Description

When calculating the pseudotime, the trajectory is expected to be rooted (see add_root())

Usage

calculate_pseudotime(trajectory)

add_pseudotime(trajectory, pseudotime = NULL)

Arguments

trajectory	The trajectory as created by infer_trajectory() or add_trajectory()
pseudotime	Named vector containing the pseudotime for every cell. If not given, the pseudotime will be calculated.

Value

The trajectory with pseudotime added, which is a named vector containing the pseudotime values for every cell.

See Also

add_root(), add_linear_trajectory()

dynwrap documentation built on July 26, 2023, 5:15 p.m.