Man pages for flowr
Streamlining Design and Deployment of Complex Workflows
| check | Check consistency of flowdef and flowmat |
| check_args | Assert none of the arguments of a function are null. |
| create_jobs_mat | create_jobs_mat |
| error | Error Handler |
| fetch | Two generic functions to search for pipelines and... |
| flow | Describing the flow class |
| flowopts | Default options/params used in flowr and ngsflows |
| generate_flow_code | generate_flow_code |
| get_resources | Extract resources used by each job of a flow get_resources... |
| get_resources_lsf | get_resources_lsf |
| get_unique_id | get_unique_id |
| get_wds | Get all the (sub)directories in a folder |
| job | Describing details of the job object |
| kill | Kill all jobs submitted to the computing platform, for one or... |
| plot_flow | Plot a clean and scalable flowchart describing the (work)flow |
| queue | A 'queue' object defines details regarding how a job is... |
| replace_slots | replace slots in a S4 object |
| rerun | Re-run a pipeline in case of hardware or software failures. |
| run | Run automated Pipelines |
| run_pipe_v2 | Run automated Pipelines |
| setup | Setup and initialize flowr |
| status | Monitor status of flow(s) |
| submit_flow | Submit a flow to the cluster |
| submit_job | Submit a step of a flow |
| submit_run | Submit several flow objects, limit the max running... |
| test_queue | test_queue |
| to_df.status | to_df.status |
| to_flow | Create flow objects |
| to_flowdef | Flow Definition defines how to stitch steps into a... |
| to_flowdet | Create a flow's submission detail file |
| to_flowmat | Create a flowmat using a list a commands. |
| verbose | Verbose levels, defining verboseness of messages |
| whisker_render | Wrapper around whisker.render with some additional checks |
| write_flow_details | Write files describing this flow |
