Files in flowr

Streamlining Design and Deployment of Complex Workflows

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

R/to-flowdef.R R/submit-local.R R/zz-parse-resources.R R/zz-create-jobs-mat.R R/check.R R/zz-flow-code.R R/parse-jobids.R R/kill-flow.R R/class-def.R R/zz-db.R R/status.R R/to-flowdet.R R/to-flow.R R/generic.R R/verbose.R R/check-args.R R/conf.R R/to-flowmat.R R/render-dependency.R R/limit_runs.R R/run_pipe_v2.R R/plot.R R/rw-flow-details.R R/rerun.R R/run.R R/zz-test-queue.R R/zz-examples.R R/submit-flow.R R/zzz.R R/setup.R R/submit-job.R R/fetch.r R/errors.R

inst/CITATION

inst/doc/flowr_install.html

inst/doc/flowr_overview.R

inst/doc/flowr_tutorial.html

inst/doc/flowr_install.Rmd

inst/doc/flowr_overview.html

inst/doc/flowr_overview.Rmd inst/doc/flowr_install.R inst/doc/flowr_tutorial.Rmd inst/doc/flowr_tutorial.R

inst/conf/flowr.conf

inst/conf/lsf.sh

inst/conf/sge.sh

inst/conf/torque_comm.sh

inst/conf/slurm.sh

inst/conf/torque.sh

inst/conf/moab.sh

inst/conf/local.sh

inst/conf/test.sh

inst/pipelines/abcd.tsv

inst/pipelines/fastq_bam_bwa.def

inst/pipelines/README.md inst/pipelines/sleep_pipe.pdf inst/pipelines/fastq_bam_bwa.R

inst/pipelines/sleep_pipe.def

inst/pipelines/abcd.def

inst/pipelines/sleep_pipe.tsv

inst/pipelines/fastq_bam_bwa.conf

inst/pipelines/sleep_pipe.R

inst/scripts/check_file_status.sh

inst/scripts/flowr.v1

inst/scripts/flowr

build/vignette.rds

tests/testthat.R tests/README.md tests/testthat/test-cases.R tests/testthat/test-plots.R tests/testthat/test-checkargs.R tests/testthat/test-toflow.R vignettes/flowr_install.Rmd vignettes/flowr_overview.Rmd vignettes/flowr_tutorial.Rmd

vignettes/flowr_tutorial_files/figure-html/plot_tweaked_def-1.png

vignettes/flowr_tutorial_files/figure-html/plot_skeleton_def-1.png

vignettes/files/logo_blue.png

vignettes/files/platforms_supported.txt

vignettes/files/logo_red.png

vignettes/files/googl.js

vignettes/files/toy.png

vignettes/files/logo.png

vignettes/files/logo_green.png

vignettes/files/flow_def_columns.txt

vignettes/files/logo_black.png

vignettes/flowr_overview_files/figure-html/plot_abcd-1.png

vignettes/flowr_overview_files/figure-html/plot_one_one-1.png

vignettes/flowr_overview_files/figure-html/plotit-1.png

man/run.Rd man/setup.Rd man/check.Rd man/fetch.Rd man/get_unique_id.Rd man/whisker_render.Rd man/to_flowdef.Rd man/queue.Rd man/get_resources_lsf.Rd man/to_df.status.Rd man/to_flowmat.Rd man/test_queue.Rd man/verbose.Rd man/submit_job.Rd man/plot_flow.Rd man/replace_slots.Rd man/create_jobs_mat.Rd man/kill.Rd man/flow.Rd man/get_resources.Rd man/write_flow_details.Rd man/submit_flow.Rd man/generate_flow_code.Rd man/run_pipe_v2.Rd man/rerun.Rd man/status.Rd man/job.Rd man/to_flow.Rd man/error.Rd man/to_flowdet.Rd man/get_wds.Rd man/flowopts.Rd man/check_args.Rd man/submit_run.Rd

flowr documentation built on March 3, 2021, 1:12 a.m.