Files in flowr
Streamlining Design and Deployment of Complex Workflows

inst
inst/CITATION
inst/scripts
inst/scripts/flowr
inst/scripts/flowr.v1
inst/scripts/check_file_status.sh
inst/scripts/show_linkage.R
inst/conf
inst/conf/flowr.conf
inst/conf/torque_comm.sh
inst/conf/sge.sh
inst/conf/local.sh
inst/conf/slurm.sh
inst/conf/torque.sh
inst/conf/moab.sh
inst/conf/lsf.sh
inst/doc
inst/doc/flowr_install.R
inst/doc/flowr_install.html
inst/doc/flowr_overview.Rmd
inst/doc/flowr_overview.html
inst/doc/flowr_tutorial.Rmd inst/doc/flowr_tutorial.R
inst/doc/flowr_tutorial.html
inst/doc/flowr_overview.R inst/doc/flowr_install.Rmd
inst/pipelines
inst/pipelines/sleep_pipe.tsv
inst/pipelines/fastq_bam_bwa.R
inst/pipelines/sleep_pipe.def
inst/pipelines/abcd.tsv
inst/pipelines/sleep_pipe.pdf inst/pipelines/sleep_pipe.R inst/pipelines/README.md
inst/pipelines/fastq_bam_bwa.def
inst/pipelines/fastq_bam_bwa.conf
inst/pipelines/abcd.def
tests
tests/README.md tests/testthat.R
tests/testthat
tests/testthat/test-checkargs.R tests/testthat/test-plots.R tests/testthat/test-toflow.R
NAMESPACE
NEWS.md
R
R/rerun.R R/zz-flow-code.R R/submit-local.R R/to-flowdef.R R/check.R R/generic.R R/fetch.r R/conf.R R/to-flow.R R/plot.R R/render-dependency.R R/parse-jobids.R R/zz-create-jobs-mat.R R/errors.R R/zz-examples.R R/zz-db.R R/class-def.R R/zz-parse-resources.R R/to-flowmat.R R/status.R R/setup.R R/run.R R/verbose.R R/check-args.R R/limit_runs.R R/submit-flow.R R/rw-flow-details.R R/submit-job.R R/kill-flow.R R/to-flowdet.R R/zzz.R R/zz-test-queue.R
vignettes
vignettes/flowr_tutorial_files
vignettes/flowr_tutorial_files/figure-html
vignettes/flowr_tutorial_files/figure-html/plot_skeleton_def-1.png
vignettes/flowr_tutorial_files/figure-html/plot_tweaked_def-1.png
vignettes/flowr_overview.Rmd vignettes/flowr_tutorial.Rmd
vignettes/files
vignettes/files/platforms_supported.txt
vignettes/files/logo.png
vignettes/files/flow_def_columns.txt
vignettes/files/logo_red.png
vignettes/files/logo_green.png
vignettes/files/logo_blue.png
vignettes/files/googl.js
vignettes/files/toy.png
vignettes/files/logo_black.png
vignettes/flowr_overview_files
vignettes/flowr_overview_files/figure-html
vignettes/flowr_overview_files/figure-html/plot_one_one-1.png
vignettes/flowr_overview_files/figure-html/plot_abcd-1.png
vignettes/flowr_overview_files/figure-html/plotit-1.png
vignettes/flowr_install.Rmd README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/verbose.Rd man/to_flowdet.Rd man/rerun.Rd man/run.Rd man/flowopts.Rd man/status.Rd man/write_flow_details.Rd man/flow.Rd man/get_wds.Rd man/queue.Rd man/submit_run.Rd man/replace_slots.Rd man/plot_flow.Rd man/test_queue.Rd man/whisker_render.Rd man/submit_job.Rd man/to_flowmat.Rd man/generate_flow_code.Rd man/to_flowdef.Rd man/kill.Rd man/check.Rd man/create_jobs_mat.Rd man/job.Rd man/error.Rd man/check_args.Rd man/get_unique_id.Rd man/to_flow.Rd man/fetch.Rd man/submit_flow.Rd man/setup.Rd
LICENSE
flowr documentation built on May 29, 2017, 4:13 p.m.