setup: Setup and initialize flowr

In flowr: Streamlining Design and Deployment of Complex Workflows

Description

This functions creates a directory structure in user's home directory. Additionally it creates a shortcut to the flowr helper script in ~/bin.

Usage

setup(
  bin = "~/bin",
  flow_base_path = opts_flow$get("flow_base_path"),
  flow_run_path = opts_flow$get("flow_run_path"),
  flow_conf_path = opts_flow$get("flow_conf_path"),
  flow_pipe_path = opts_flow$get("flow_pipe_paths")
)

Arguments

bin	path to bin folder
flow_base_path	The base of flowr configuration and execution folders.
flow_run_path	base path to be used for execution of this flow. flowr would create a new time-stamped folder in this base path and use it for logs, scripts etc. The default is retrieved using opts_flow$get("flow_run_path").
flow_conf_path	Flowr configuration folder, used by fetch_conf.
flow_pipe_path	Folder with all pipelines, used by fetch_pipes.

Details

Will add more to this, to identify cluster and aid in other things.

flowr documentation built on March 3, 2021, 1:12 a.m.