status: Monitor status of flow(s)

In flowr: Streamlining Design and Deployment of Complex Workflows

Description

Summarize status of a flow OR multiple flows OR a high-level summary of all flows in a folder.

Usage

status(
  x,
  use_cache = FALSE,
  verbose = opts_flow$get("verbose"),
  out_format = "markdown",
  ...
)

get_status(x, ...)

## S3 method for class 'flow'
get_status(x, verbose, use_cache, out_format, ...)

## S3 method for class 'character'
get_status(x, verbose, use_cache, out_format, ...)

## S3 method for class 'data.frame'
get_status(x, verbose, use_cache, progress = TRUE, ...)

Arguments

x	path to the flow root folder or a parent folder to summarize several flows.
use_cache	This skips checking status of jobs which have already been completed a and assumes no new jobs were submitted in the flow(s) being monitored. [FALSE]
verbose	A numeric value indicating the amount of messages to produce. Values are integers varying from 0, 1, 2, 3, .... Please refer to the verbose page for more details. opts_flow$get("verbose")
out_format	passed onto knitr:::kable. supports: markdown, rst, html... [markdown]
...	not used
progress	Whether or not to show a progress bar, when fetching/reading files [TRUE]

Details

basename(x) is used in a wild card search.

• Get status of all the flows: (all flows with 'sleep_pipe' in their name are checked and their status is shown) <br> flowr status x=~/flowr/runs/sleep_pipe*

• Provide a high level summary of ALL flows in a folder: <br> flowr status x=~/flowr/runs

Use use_cache=TRUE to speed up checking the status. This assumes that no new jobs have been submitted and skips (re-)checking status of completed jobs.

Once all the jobs have been submitted to the cluster you may always use use_cache=TRUE.

Examples

## Not run: 
status(x = "~/flowr/runs/sleep_pipe*")
## an example for running from terminal
flowr status x=path_to_flow_directory

## End(Not run)

flowr documentation built on March 3, 2021, 1:12 a.m.