CircosCnv: Create a CNV module to a moduleList

In interacCircos: The Visualization of Interactive Circos Plot

Description

A copy number variance module displayed in the visualization

Usage

CircosCnv(
  modulename,
  compareGroup = 1,
  maxRadius = 200,
  minRadius = 190,
  width = 10,
  color = "#CAE1FF",
  ValueAxisManualScale = FALSE,
  ValueAxisMaxScale = 10,
  ValueAxisMinScale = 0,
  strokeColor = "black",
  strokeWidth = 1,
  opacity = 1,
  animationDisplay = FALSE,
  animationTime = 2000,
  animationDelay = 50,
  animationType = "bounce",
  data,
  ...
)

Arguments

modulename	The name of the new module.
compareGroup	The group number of this module in compare module
maxRadius, minRadius	Where the module should begin and end.
width	Width for CNV module
color	Color for CNV module
ValueAxisManualScale	Whether manually control the scale of value
ValueAxisMaxScale, ValueAxisMinScale	The max and min scale value for manually control
strokeColor, strokeWidth	The color and width for stroke
opacity	The opacity for module
animationDisplay	Whether display animation
animationTime, animationDelay, animationType	The time, delay and display type for animation
data	A list of CNV with details including start, end, value, link, color and html. Details can be found on document.
...	Ignored

Value

The module tracks for cnv modules.

Examples

cnvData<-cnvExample
Circos(CircosCnv('Cnv01',maxRadius =175, minRadius =116, data =cnvData,width=2,color = "#4876FF")+
CircosBackground("bg01",minRadius = 116,maxRadius = 175,fillColors = "#F2F2F2",axisShow = TRUE),
CNVMouseOverDisplay = TRUE)

interacCircos documentation built on Jan. 21, 2021, 5:10 p.m.