CircosHeatmap: Create a HEATMAP module to a moduleList

In interacCircos: The Visualization of Interactive Circos Plot

Description

A heatmap plot displayed in the visualization

Usage

CircosHeatmap(
  modulename,
  compareGroup = 1,
  maxRadius = 180,
  minRadius = 100,
  minColor = "red",
  maxColor = "green",
  ValueAxisManualScale = FALSE,
  ValueAxisMaxScale = 10,
  ValueAxisMinScale = 0,
  totalLayer = 1,
  animationDisplay = FALSE,
  animationDirection = "O2I",
  animationColorDirection = "L2C",
  animationTime = 2000,
  animationDelay = 20,
  animationType = "bounce",
  data,
  ...
)

Arguments

modulename	The name of the new module.
compareGroup	The group number of this module in compare module
maxRadius, minRadius	Where the module should begin and end.
minColor	The color for heatmap with min value
maxColor	The color for heatmap with max value
ValueAxisManualScale	Whether manually control the scale of value
ValueAxisMaxScale, ValueAxisMinScale	The max and min scale value for manually control
totalLayer	The color and width for stroke
animationDisplay	Whether display animation
animationDirection	The direction for animation. O2I: from outside to inside, I2O: from inside to outside
animationColorDirection	The color changing in animation. L2C: lowest to customized, H2C: highest to customized, the customized color should be defined in data
animationTime, animationDelay, animationType	The time, delay and display type for animation
data	A list of value in heatmap plot with details including chr, start, end, value, name, layer and html. Details can be found on document.
...	Ignored

Value

The module tracks for heatmap modules.

Examples

heatmapData<-heatmapExample
Circos(CircosHeatmap('Heatmap01', maxRadius= 180, minRadius = 100, data=heatmapData,totalLayer = 3),
genome = list("2L"=23011544,"2R"=21146708,"3L"=24543557,"3R"=27905053,"4"=1351857,"X"=22422827),
HEATMAPMouseEvent = TRUE,HEATMAPMouseOverDisplay = TRUE)

interacCircos documentation built on Jan. 21, 2021, 5:10 p.m.