CircosHistogram: Create a HISTOGRAM module to a moduleList

In interacCircos: The Visualization of Interactive Circos Plot

Description

Display a multi-layer histogram in circos

Usage

CircosHistogram(
  modulename,
  compareGroup = 1,
  maxRadius = 108,
  minRadius = 95,
  ValueAxisManualScale = FALSE,
  ValueAxisMaxScale = 10,
  ValueAxisMinScale = 0,
  fillColor = "red",
  animationDisplay = FALSE,
  animationTime = 2000,
  animationDelay = 20,
  data,
  ...
)

Arguments

modulename	The name of the new module.
compareGroup	The group number of this module in compare module
maxRadius, minRadius	Where the module should begin and end
ValueAxisManualScale	Whether manually control the scale of value
ValueAxisMaxScale, ValueAxisMinScale	The max and min scale value for manually control
fillColor	The color for histgram.
animationDisplay	Whether display animation
animationTime, animationDelay	The time and delay for animation
data	A list of value with details including chr, start, end, name, link, value and html. Details can be found on document.
...	Ignored

Value

The module tracks for histogram modules.

Examples

histogramData<-histogramExample
Circos(CircosHistogram('HISTOGRAM01', data = histogramData,fillColor= "#ff7f0e",maxRadius = 210,
minRadius = 175),genome=list("2L"=23011544,"2R"=21146708,"3L"=24543557,"3R"= 27905053,
"X"=22422827,"4"=1351857),
outerRadius = 220)

interacCircos documentation built on Jan. 21, 2021, 5:10 p.m.