CircosScatter: Create a SCATTER module to a moduleList

In interacCircos: The Visualization of Interactive Circos Plot

Description

Display a point plot in circos

Usage

CircosScatter(
  modulename,
  compareGroup = 1,
  radius = 140,
  innerCircleSize = 1,
  outerCircleSize = 5,
  innerCircleColor = "#F26223",
  outerCircleColor = "#F26223",
  innerPointType = "circle",
  outerPointType = "circle",
  innerrectWidth = 2,
  innerrectHeight = 2,
  outerrectWidth = 2,
  outerrectHeight = 2,
  outerCircleOpacity = 1,
  random_data = 0,
  animationDisplay = FALSE,
  animationInitialPositionX = 0,
  animationInitialPositionY = 0,
  animationTime = 2000,
  animationDelay = 20,
  animationType = "bounce",
  data,
  ...
)

Arguments

modulename	The name of the new module.
compareGroup	The group number of this module in compare module
radius	Radius of scatter circle
innerCircleSize, outerCircleSize	If circle, inner and outer circle size
innerCircleColor, outerCircleColor	If circle, inner and outer circle color
innerPointType, outerPointType	The type for inner and outer point, could be circle or rect
innerrectWidth, innerrectHeight	If rect, inner width and height
outerrectWidth, outerrectHeight	If rect, inner width and height
outerCircleOpacity	If circle, the opacity for outer circle
random_data	Scatter position fluctuation
animationDisplay	Whether display animation
animationInitialPositionX, animationInitialPositionY	The initial coordinates for animation
animationTime, animationDelay, animationType	The time, delay and display type for animation
data	A list of value with details including chr, start, end, name, des, link and html. Details can be found on document.
...	Ignored

Value

The module tracks for scatter modules.

Examples

scatterData<-scatterExample
Circos(CircosScatter('SCATTER01', data = scatterData,radius=180,innerCircleColor= "#3d6390",
outerCircleColor= "#99cafe",random_data= 40))

interacCircos documentation built on Jan. 21, 2021, 5:10 p.m.