CircosArc: Create a ARC module to a moduleList

In interacCircos: The Visualization of Interactive Circos Plot

Description

Display the CNV without value, Gene domain, Chromosome band in the visualization

Usage

CircosArc(
  modulename,
  compareGroup = 1,
  outerRadius = 150,
  innerRadius = 130,
  opacity = 1,
  animationDisplay = FALSE,
  animationTime = 2000,
  animationDelay = 20,
  animationType = "bounce",
  data,
  ...
)

Arguments

modulename	The name of the new module.
compareGroup	The group number of this module in compare module
innerRadius, outerRadius	Where the module should begin and end
opacity	The opacity for arc
animationDisplay	Whether display animation
animationTime, animationDelay, animationType	The time, delay and display type for animation
data	A list of arc with details including chr, start, end, color, des, link and html. Details can be found on document.
...	Ignored

Value

The module tracks for arc modules.

Examples

arcData<-arcExample
Circos(CircosArc('Arc01', outerRadius = 212, innerRadius = 224, data=arcData),
 genome=list("EGFR"=1211),outerRadius = 220,genomeFillColor = c("grey"))

interacCircos documentation built on Jan. 21, 2021, 5:10 p.m.