CircosWig: Create a WIG module to a moduleList

In interacCircos: The Visualization of Interactive Circos Plot

Description

Display a multi-layer line plot in circos

Usage

CircosWig(
  modulename,
  compareGroup = 1,
  maxRadius = 108,
  minRadius = 95,
  direction = "out",
  ValueAxisManualScale = FALSE,
  ValueAxisMaxScale = 10,
  ValueAxisMinScale = 0,
  color = "red",
  opacity = 1,
  strokeColor = "black",
  strokeWidth = 1,
  strokeType = "cardinal",
  animationDisplay = FALSE,
  animationTime = 2000,
  animationDelay = 20,
  animationType = "bounce",
  data,
  ...
)

Arguments

modulename	The name of the new module.
compareGroup	The group number of this module in compare module
maxRadius, minRadius	Where the module should begin and end
direction	The direction of plot, either inside or outside
ValueAxisManualScale	Whether manually control the scale of value
ValueAxisMaxScale, ValueAxisMinScale	The max and min scale value for manually control
color	Color for plot
opacity	Opacity for plot
strokeColor	The color for stroke
strokeWidth	The width for stroke
strokeType	Line type for stroke, could be linear, cardinal, basis and monotone
animationDisplay	Whether display animation
animationTime, animationDelay, animationType	The time, delay and display type for animation
data	A list of value with details including chr, pos, des, value and html. Details can be found on document.
...	Ignored

Value

The module tracks for wig modules.

Examples

wigData<-wigExample
Circos(CircosWig('WIG01', data = wigData, maxRadius= 200,minRadius= 150,strokeColor= "darkblue",
color= "lightblue",strokeType= "cardinal")+CircosBackground('BG01',minRadius = 205,maxRadius = 150)
,genome=list("chr8"=1000),outerRadius = 220)

interacCircos documentation built on Jan. 21, 2021, 5:10 p.m.