R/interacCircos.R
In interacCircos: The Visualization of Interactive Circos Plot

Documented in Circos CircosArc CircosAuxLine CircosBackground CircosBubble CircosChord CircosChord.p CircosCnv CircosGene CircosHeatmap CircosHistogram CircosLegend CircosLine CircosLink CircosLollipop CircosModuleList CircosOutput CircosScatter CircosSnp CircosText CircosWig renderCircos

#' @title interacCircos
#'
#' @description Visualization of Interactive Circos Plot
#'
#' @import htmlwidgets
#' @import RColorBrewer
#' @import plyr
#' @import jsonlite
#' @import grDevices
#' 
#' @export

#' @param moduleList Module list displayed in plot.
#' @param genome Could be either 'hg19', which is defaultly set to use chromosomes of hg19, or a list of chromosomes with length, for example, list("chr1"=100,"chr2"=200).
#' @param genome2 Second genome when compare module is applied, format is same as genome
#' @param genomeFillColor Could be either a color palette from RColorBrewer, or a list of color name, for example, list("yellow","rgb(1,255,255)")
#' @param chrPad Distance between each chromosome, default is 0.04
#' @param width,height The width and height for svg element, could be px or percent or auto.
#' @param svgClassName The svg class name
#' @param innerRadius Default 216, Inner radius of chromosome
#' @param outerRadius Default 240, Outer radius of chromosome
#' @param displayGenomeBorder,genomeBorderColor,genomeBorderSize Should the reference genome have borders?
#' @param genomeTicksDisplay,genomeTicksLen,genomeTicksColor,genomeTicksTextSize,genomeTicksTextColor,genomeTicksScale,genomeTicksRealLength,genomeTicksOffset Whether display
#' the ticks for chromosome panel. Other parameters only works when genomeTicksDisplay is TRUE and their details are available on document.
#' @param genomeLabelDisplay,genomeLabelTextSize,genomeLabelTextColor,genomeLabelDx,genomeLabelDy Whether display the label for chromosome panel. Other parameters only
#'  works when genomeTicksDisplay is TRUE and their details are available on document.
#' @param compareEvent  Default False, open/not COMPARE module
#' @param compareEventGroupGapRate Default 0.1, control the two-side gap rate on each group of genome
#' @param compareEventGroupDistance Default 0, distance between two groups of genome
#' @param zoom Whether or not the plot is zoomable?
#' @param TEXTModuleDragEvent Are text annotations draggable?
#' @param SNPxlink Default False, add/not xlink for SNP module
#' @param SNPMouseEvent Default True, open/not open mouse event of SNP module
#' @param SNPMouseCombinationEvent Default False, open/not COMBINATION module for SNP module
#' @param SNPMouseCombinationImageDisplay Defalut False, open/not image display in COMBINATION module for SNP module
#' @param SNPMouseCombinationImageTitle Title of the image
#' @param SNPMouseCombinationImageTitleSize,SNPMouseCombinationImageTitleWeight,SNPMouseCombinationImageTitleColor Size, weight and color of the title
#' @param SNPMouseCombinationImagePositionX,SNPMouseCombinationImagePositionY Coordinates for image
#' @param SNPMouseCombinationImageHeight,SNPMouseCombinationImageWidth Height and width of image
#' @param SNPMouseCombinationGraphDisplay Defalut False, open/not graph display in COMBINATION module for SNP module
#' @param SNPMouseCombinationGraphTitle Title of the graph
#' @param SNPMouseCombinationGraphTitleSize,SNPMouseCombinationGraphTitleWeight,SNPMouseCombinationGraphTitleColor Size, weight and color of the title
#' @param SNPMouseCombinationGraphType Type of graph
#' @param SNPMouseCombinationGraphPositionX,SNPMouseCombinationGraphPositionY Coordinates for graph
#' @param SNPMouseCombinationGraphHeight,SNPMouseCombinationGraphWidth Height and width for graph
#' @param SNPMouseCombinationGraphHistogramBarColor Bar color of histogram graph
#' @param SNPMouseCombinationGraphHistogramPadding Padding between bar of histogram graph
#' @param SNPMouseCombinationGraphHistogramPositionCorrectX Correction distance of X axis in histogram
#' @param SNPMouseCombinationGraphPieAutoColor Whether use auto color for pie graph or not
#' @param SNPMouseCombinationGraphPieColor Color for pie graph if auto color is false
#' @param SNPMouseCombinationGraphPieSize Size of pie graph
#' @param SNPMouseCombinationGraphPieStroke Whether each pie has a stroke or not
#' @param SNPMouseCombinationGraphPieStrokeColor,SNPMouseCombinationGraphPieStrokeWidth The stroke color and width for pie graph
#' @param SNPMouseCombinationGraphPieOpacity Opacity for pie graph
#' @param SNPMouseCombinationGraphLineType,SNPMouseCombinationGraphLineColor,SNPMouseCombinationGraphLineWidth Line type, color and width for line graph
#' @param SNPMouseCombinationGraphLinePoint Whether display the broken point in line graph
#' @param SNPMouseCombinationGraphLinePointSize Size of broken point
#' @param SNPMouseCombinationGraphLinePointAutoColor Whether display the broken point in auto color
#' @param SNPMouseCombinationGraphLinePointColor Color for broken point if auto color is false
#' @param SNPMouseCombinationGraphLinePointStroke Whether display the broken point stroke
#' @param SNPMouseCombinationGraphLinePointStrokeColor,SNPMouseCombinationGraphLinePointStrokeWidth The stroke color and width for broken point
#' @param SNPMouseCombinationGraphLinePointOpacity Opacity for broken line
#' @param SNPMouseCombinationGraphLinePositionCorrectX Correction distance of X axis for line
#' @param SNPMouseCombinationTextDisplay Defalut False, open/not text display in COMBINATION module for SNP module
#' @param SNPMouseCombinationTextColor,SNPMouseCombinationTextSize,SNPMouseCombinationTextWeight The color, size and weight for text
#' @param SNPMouseCombinationTextPositionCorrectX,SNPMouseCombinationTextPositionCorrectY The coordinates for text
#' @param SNPMouseClickDisplay Default False, show/not the tooltip when mouse click on a SNP point.
#' @param SNPMouseClickColor Color after clicking the element
#' @param SNPMouseClickCircleSize Circle size after clicking the element
#' @param SNPMouseClickCircleOpacity Opacity after clicking the element
#' @param SNPMouseClickCircleStrokeColor Stroke color after clicking the element
#' @param SNPMouseClickCircleStrokeWidth Stroke width after clicking the element
#' @param SNPMouseClickTextFromData First,second,third,fourth column data click to show
#' @param SNPMouseClickTextOpacity Text opacity after clicking the element
#' @param SNPMouseClickTextColor Text color after clicking the element
#' @param SNPMouseClickTextSize Text size after clicking the element
#' @param SNPMouseClickTextPostionX,SNPMouseClickTextPostionY Text coordinate after clicking the element
#' @param SNPMouseClickTextDrag Whether text is draggable for element
#' @param SNPMouseUpDisplay Default False, show/not the tooltip when mouse click up a SNP point.
#' @param SNPMouseUpColor Color after mouse moving up the element
#' @param SNPMouseUpCircleSize Circle size after mouse moving up the element
#' @param SNPMouseUpCircleOpacity Circle opacity after mouse moving up the element
#' @param SNPMouseUpCircleStrokeColor Circle stroke color after mouse moving up the element
#' @param SNPMouseUpCircleStrokeWidth Circle stroke width after mouse moving up the element
#' @param SNPMouseDownDisplay Default False, show/not the tooltip when mouse click down a SNP point.
#' @param SNPMouseDownColor Color after mouse moving down the element
#' @param SNPMouseDownCircleSize Circle size after mouse moving down the element
#' @param SNPMouseDownCircleOpacity Circle opacity after mouse moving down the element
#' @param SNPMouseDownCircleStrokeColor Circle stroke color after mouse moving down the element
#' @param SNPMouseDownCircleStrokeWidth Circle stroke width after mouse moving down the element
#' @param SNPMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a SNP point.
#' @param SNPMouseEnterColor Color after mouse entering enter the element
#' @param SNPMouseEnterCircleSize Circle size after mouse entering the element
#' @param SNPMouseEnterCircleOpacity Circle opacity after mouse entering the element
#' @param SNPMouseEnterCircleStrokeColor Circle stroke color after mouse entering the element
#' @param SNPMouseEnterCircleStrokeWidth Circle stroke width after mouse entering the element
#' @param SNPMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a SNP point.
#' @param SNPMouseLeaveColor Color after mouse leaving the element
#' @param SNPMouseLeaveCircleSize Circle size after mouse leaving the element
#' @param SNPMouseLeaveCircleOpacity Circle opacity after mouse leaving the element
#' @param SNPMouseLeaveCircleStrokeColor Circle stroke color after mouse leaving the element
#' @param SNPMouseLeaveCircleStrokeWidth Circle stroke width after mouse leaving the element
#' @param SNPMouseMoveDisplay Default False, show/not the tooltip when mouse move into a SNP point.
#' @param SNPMouseMoveColor Color after mouse moving in the element
#' @param SNPMouseMoveCircleSize Circle size after mouse moving in the element
#' @param SNPMouseMoveCircleOpacity Circle opacity after mouse moving in the element
#' @param SNPMouseMoveCircleStrokeColor Circle stroke color after mouse moving in the element
#' @param SNPMouseMoveCircleStrokeWidth Circle stroke width after mouse moving in the element
#' @param SNPMouseOverDisplay Default False, show/not the tooltip when mouse hover on a SNP point.
#' @param SNPMouseOverColor Color after mouse moving over the element
#' @param SNPMouseOverCircleSize Circle size after mouse moving over the element
#' @param SNPMouseOverCircleOpacity Circle opacity after mouse moving over the element
#' @param SNPMouseOverCircleStrokeColor Circle stroke color after mouse moving over the element
#' @param SNPMouseOverCircleStrokeWidth Circle stroke width after mouse moving over the element
#' @param SNPMouseOverTooltipsSetting Default "chr : "
#' @param SNPMouseOverTooltipsHtml Default " "
#' @param SNPMouseOverTooltipsPosition Position for tooltips when mouse moving over
#' @param SNPMouseOverTooltipsBackgroundColor Background color for tooltips when mouse moving over
#' @param SNPMouseOverTooltipsBorderStyle Border style for tooltips when mouse moving over
#' @param SNPMouseOverTooltipsBorderWidth Border width for tooltips when mouse moving over
#' @param SNPMouseOverTooltipsPadding Padding for tooltips when mouse moving over
#' @param SNPMouseOverTooltipsBorderRadius Border radius for tooltips when mouse moving over
#' @param SNPMouseOverTooltipsOpacity Opacity for tooltips when mouse moving over
#' @param SNPMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a SNP point anymore.
#' @param SNPMouseOutAnimationTime Animation time when mouse moving over the element
#' @param SNPMouseOutColor Color when mouse moving over the element
#' @param SNPMouseOutCircleSize Circle size when mouse moving over the element
#' @param SNPMouseOutCircleOpacity Opacity when mouse moving over the element
#' @param SNPMouseOutCircleStrokeColor Stroke color when mouse moving over the element
#' @param SNPMouseOutCircleStrokeWidth Stroke width when mouse moving over the element
#'
#' @param LINKxlink Default False, add/not xlink for LINK module
#' @param LINKMouseEvent Default True, open/not open mouse event of LINK module
#' @param LINKMouseClickDisplay Default False, show/not the tooltip when mouse click on a LINK point.
#' @param LINKMouseClickOpacity Opacity when mouse clicking
#' @param LINKMouseClickStrokeColor Stroke color when mouse clicking
#' @param LINKMouseClickStrokeWidth Stroke width when mouse clicking
#' @param LINKMouseUpDisplay Default False, show/not the tooltip when mouse click up a LINK point.
#' @param LINKMouseUpOpacity Opacity when mouse moving up the element
#' @param LINKMouseUpStrokeColor Stroke color when mouse moving up the element
#' @param LINKMouseUpStrokeWidth Stroke width when mouse moving up the element
#' @param LINKMouseDownDisplay Default False, show/not the tooltip when mouse click down a LINK point.
#' @param LINKMouseDownOpacity Opacity when mouse moving down the element
#' @param LINKMouseDownStrokeColor Stroke color when mouse moving down the element
#' @param LINKMouseDownStrokeWidth Stroke width when mouse moving down the element
#' @param LINKMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a LINK point.
#' @param LINKMouseEnterOpacity Opacity when mouse entering the element
#' @param LINKMouseEnterStrokeColor Stroke color when mouse entering the element
#' @param LINKMouseEnterStrokeWidth Stroke width when mouse entering the element
#' @param LINKMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a LINK point.
#' @param LINKMouseLeaveOpacity Opacity when mouse leaving the element
#' @param LINKMouseLeaveStrokeColor Stroke color when mouse leaving the element
#' @param LINKMouseLeaveStrokeWidth Stroke width when mouse leaving the element
#' @param LINKMouseMoveDisplay Default False, show/not the tooltip when mouse move into a LINK point.
#' @param LINKMouseMoveOpacity Opacity when mouse moving in the element
#' @param LINKMouseMoveStrokeColor Stroke color when mouse moving in the element
#' @param LINKMouseMoveStrokeWidth Stroke width when mouse moving in the element
#' @param LINKMouseOverDisplay Default False, show/not the tooltip when mouse hover on a LINK point.
#' @param LINKMouseOverOpacity Opacity when mouse moving over the element
#' @param LINKMouseOverStrokeColor Stroke color when mouse moving over the element
#' @param LINKMouseOverStrokeWidth Stroke width when mouse moving over the element
#' @param LINKMouseOverTooltipsSetting Default "style1"
#' @param LINKMouseOverTooltipsHtml Default " "
#' @param LINKMouseOverTooltipsPosition Default "absolute"
#' @param LINKMouseOverTooltipsBackgroundColor Default "white"
#' @param LINKMouseOverTooltipsBorderStyle Default "solid"
#' @param LINKMouseOverTooltipsBorderWidth Default 0
#' @param LINKMouseOverTooltipsPadding Default "3px"
#' @param LINKMouseOverTooltipsBorderRadius Default "3px"
#' @param LINKMouseOverTooltipsOpacity Default 0.8
#' @param LINKMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a LINK point anymore.
#' @param LINKMouseOutAnimationTime Animation time when mouse moving out the element
#' @param LINKMouseOutOpacity Opacity when mouse moving out the element
#' @param LINKMouseOutStrokeColor Stroke color when mouse moving out the element
#' @param LINKMouseOutStrokeWidth Stroke width when mouse moving out the element
#' @param LINKLabelDragEvent Defalut False, draggable for the label of LINK module
#'
#' @param CHORDMouseEvent Default True, open/not open mouse event of CHORD module from NG-Circos.
#' @param CHORDMouseFillColorExcluded A type of color in character, chord in this color will be hided
#' @param CHORDMouseClickDisplay Default False, show/not the tooltip when mouse click on a CHORD point.
#' @param CHORDMouseClickOpacity Opacity when mouse clicking
#' @param CHORDMouseClickStrokeColor Stroke color when mouse clicking
#' @param CHORDMouseClickStrokeWidth Stroke width when mouse clicking
#' @param CHORDMouseDownDisplay Default False, show/not the tooltip when mouse click down a CHORD point.
#' @param CHORDMouseDownOpacity Opacity when mouse moving down the element
#' @param CHORDMouseDownStrokeColor Stroke color when mouse moving down the element
#' @param CHORDMouseDownStrokeWidth Stroke width when mouse moving down the element
#' @param CHORDMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a CHORD point.
#' @param CHORDMouseEnterOpacity Opacity when mouse entering the element
#' @param CHORDMouseEnterStrokeColor Stroke color when mouse entering the element
#' @param CHORDMouseEnterStrokeWidth Stroke width when mouse entering the element
#' @param CHORDMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a CHORD point.
#' @param CHORDMouseLeaveOpacity Opacity when mouse leaving the element
#' @param CHORDMouseLeaveStrokeColor Stroke color when mouse leaving the element
#' @param CHORDMouseLeaveStrokeWidth Stroke width when mouse leaving the element
#' @param CHORDMouseMoveDisplay Default False, show/not the tooltip when mouse move into a CHORD point.
#' @param CHORDMouseMoveOpacity Opacity when mouse moving in the element
#' @param CHORDMouseMoveStrokeColor Stroke color when mouse moving in the element
#' @param CHORDMouseMoveStrokeWidth Stroke width when mouse moving in the element
#' @param CHORDMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a CHORD point anymore.
#' @param CHORDMouseOutAnimationTime Animation time when mouse moving out the element
#' @param CHORDMouseOutOpacity Opacity when mouse moving out the element
#' @param CHORDMouseOutStrokeColor Stroke color when mouse moving out the element
#' @param CHORDMouseOutStrokeWidth Stroke width when mouse moving out the element
#' @param CHORDMouseUpDisplay Default False, show/not the tooltip when mouse click up a CHORD point.
#' @param CHORDMouseUpOpacity Opacity when mouse moving up the element
#' @param CHORDMouseUpStrokeColor Stroke color when mouse moving up the element
#' @param CHORDMouseUpStrokeWidth Stroke width when mouse moving up the element
#' @param CHORDMouseOverDisplay Default False, show/not the tooltip when mouse hover on a CHORD point.
#' @param CHORDMouseOverOpacity Opacity when mouse moving over the element
#' @param CHORDMouseOverStrokeColor Stroke color when mouse moving over the element
#' @param CHORDMouseOverStrokeWidth Stroke width when mouse moving over the element
#'
#' @param HISTOGRAMxlink Default False, add/not xlink for HISTOGRAM module
#' @param HISTOGRAMMouseEvent Default True, open/not open mouse event of HISTOGRAM module
#' @param HISTOGRAMMouseClickDisplay Default False, show/not the tooltip when mouse click on a HISTOGRAM point.
#' @param HISTOGRAMMouseClickColor Color when mouse clicking
#' @param HISTOGRAMMouseClickOpacity Opacity when mouse clicking
#' @param HISTOGRAMMouseClickStrokeColor Stroke color when mouse clicking
#' @param HISTOGRAMMouseClickStrokeWidth Stroke width when mouse clicking
#' @param HISTOGRAMMouseUpDisplay Default False, show/not the tooltip when mouse click up a HISTOGRAM point.
#' @param HISTOGRAMMouseUpColor Color when mouse moving up the element
#' @param HISTOGRAMMouseUpOpacity Opacity when mouse moving up the element
#' @param HISTOGRAMMouseUpStrokeColor Stroke color when mouse moving up the element
#' @param HISTOGRAMMouseUpStrokeWidth Stroke width when mouse moving up the element
#' @param HISTOGRAMMouseDownDisplay Default False, show/not the tooltip when mouse click down a HISTOGRAM point.
#' @param HISTOGRAMMouseDownColor Color when mouse moving down the element
#' @param HISTOGRAMMouseDownOpacity Opacity when mouse moving up the element
#' @param HISTOGRAMMouseDownStrokeColor Stroke color when mouse moving up the element
#' @param HISTOGRAMMouseDownStrokeWidth Stroke width when mouse moving up the element
#' @param HISTOGRAMMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a HISTOGRAM point.
#' @param HISTOGRAMMouseEnterColor Color when mouse entering the element
#' @param HISTOGRAMMouseEnterOpacity Opacity when mouse entering the element
#' @param HISTOGRAMMouseEnterStrokeColor Stroke color when mouse entering the element
#' @param HISTOGRAMMouseEnterStrokeWidth Stroke width when mouse entering the element
#' @param HISTOGRAMMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a HISTOGRAM point.
#' @param HISTOGRAMMouseLeaveColor Color when mouse leaving the element
#' @param HISTOGRAMMouseLeaveOpacity Opacity when mouse leaving the element
#' @param HISTOGRAMMouseLeaveStrokeColor Stroke color when mouse leaving the element
#' @param HISTOGRAMMouseLeaveStrokeWidth Stroke width when mouse leaving the element
#' @param HISTOGRAMMouseMoveDisplay Default False, show/not the tooltip when mouse move into a HISTOGRAM point.
#' @param HISTOGRAMMouseMoveColor Color when mouse moving in the element
#' @param HISTOGRAMMouseMoveOpacity Opacity when mouse moving in the element
#' @param HISTOGRAMMouseMoveStrokeColor Stroke color when mouse moving in the element
#' @param HISTOGRAMMouseMoveStrokeWidth Stroke width when mouse moving in the element
#' @param HISTOGRAMMouseOverDisplay Default False, show/not the tooltip when mouse hover on a HISTOGRAM point.
#' @param HISTOGRAMMouseOverColor Color when mouse moving over the element
#' @param HISTOGRAMMouseOverOpacity Opacity when mouse moving over the element
#' @param HISTOGRAMMouseOverStrokeColor Stroke color when mouse moving over the element
#' @param HISTOGRAMMouseOverStrokeWidth Stroke width when mouse moving over the element
#' @param HISTOGRAMMouseOverTooltipsSetting Default "style1"
#' @param HISTOGRAMMouseOverTooltipsHtml Default " "
#' @param HISTOGRAMMouseOverTooltipsPosition Default "absolute"
#' @param HISTOGRAMMouseOverTooltipsBackgroundColor Default "white"
#' @param HISTOGRAMMouseOverTooltipsBorderStyle Default "solid"
#' @param HISTOGRAMMouseOverTooltipsBorderWidth Default 0
#' @param HISTOGRAMMouseOverTooltipsPadding Default "3px"
#' @param HISTOGRAMMouseOverTooltipsBorderRadius Default "3px"
#' @param HISTOGRAMMouseOverTooltipsOpacity Default 0.8
#' @param HISTOGRAMMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a HISTOGRAM point anymore.
#' @param HISTOGRAMMouseOutAnimationTime Animation time when mouse moving out the element
#' @param HISTOGRAMMouseOutColor Color when mouse moving out the element
#' @param HISTOGRAMMouseOutOpacity Opacity when mouse moving out the element
#' @param HISTOGRAMMouseOutStrokeColor Stroke color when mouse moving out the element
#' @param HISTOGRAMMouseOutStrokeWidth Stroke width when mouse moving out the element
#'
#' @param LINEMouseEvent Default True, open/not open mouse event of LINE module
#' @param LINEMouseClickDisplay Default False, show/not the tooltip when mouse click on a LINE point.
#' @param LINEMouseClickLineOpacity Line opacity when mouse clicking the element
#' @param LINEMouseClickLineStrokeColor Stroke color when mouse clicking the element
#' @param LINEMouseClickLineStrokeWidth Stroke width when mouse clicking the element
#' @param LINEMouseDownDisplay Default False, show/not the tooltip when mouse click down a LINE point.
#' @param LINEMouseDownLineOpacity Line opacity when mouse moving down the element
#' @param LINEMouseDownLineStrokeColor Stroke color when mouse moving down the element
#' @param LINEMouseDownLineStrokeWidth Stroke width when mouse moving down the element
#' @param LINEMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a LINE point.
#' @param LINEMouseEnterLineOpacity Line opacity when mouse entering the element
#' @param LINEMouseEnterLineStrokeColor Stroke color when mouse entering the element
#' @param LINEMouseEnterLineStrokeWidth Stroke width when mouse entering the element
#' @param LINEMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a LINE point.
#' @param LINEMouseLeaveLineOpacity Line opacity when mouse leaving the element
#' @param LINEMouseLeaveLineStrokeColor Stroke color when mouse leaving the element
#' @param LINEMouseLeaveLineStrokeWidth Stroke width when mouse leaving the element
#' @param LINEMouseMoveDisplay Default False, show/not the tooltip when mouse move into a LINE point.
#' @param LINEMouseMoveLineOpacity Line opacity when mouse moving in the element
#' @param LINEMouseMoveLineStrokeColor Stroke color when mouse moving in the element
#' @param LINEMouseMoveLineStrokeWidth Stroke width when mouse moving in the element
#' @param LINEMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a LINE point anymore.
#' @param LINEMouseOutAnimationTime Animation time when mouse moving out the element
#' @param LINEMouseOutLineOpacity Line opacity when mouse moving out the element
#' @param LINEMouseOutLineStrokeColor Stroke color when mouse moving out the element
#' @param LINEMouseOutLineStrokeWidth Stroke width when mouse moving out the element
#' @param LINEMouseUpDisplay Default False, show/not the tooltip when mouse click up a LINE point.
#' @param LINEMouseUpLineOpacity Line opacity when mouse moving up the element
#' @param LINEMouseUpLineStrokeColor Stroke color when mouse moving up the element
#' @param LINEMouseUpLineStrokeWidth Stroke width when mouse moving up the element
#' @param LINEMouseOverDisplay Default False, show/not the tooltip when mouse hover on a LINE point.
#' @param LINEMouseOverLineOpacity  Line opacity when mouse moving over the element
#' @param LINEMouseOverLineStrokeColor Stroke color when mouse moving over the element
#' @param LINEMouseOverLineStrokeWidth Stroke width when mouse moving over the element
#' @param LINEMouseOverTooltipsSetting Default "style1"
#' @param LINEMouseOverTooltipsHtml Default " "
#' @param LINEMouseOverTooltipsPosition Default "absolute"
#' @param LINEMouseOverTooltipsBackgroundColor Default "white"
#' @param LINEMouseOverTooltipsBorderStyle Default "solid"
#' @param LINEMouseOverTooltipsBorderWidth Default 0
#' @param LINEMouseOverTooltipsPadding Default "3px"
#' @param LINEMouseOverTooltipsBorderRadius Default "3px"
#' @param LINEMouseOverTooltipsOpacity Default 0.8
#'
#' @param WIGMouseEvent Default True, open/not open mouse event of WIG module
#' @param WIGMouseClickDisplay Default False, show/not the tooltip when mouse click on a WIG point.
#' @param WIGMouseClickLineOpacity Line opacity when mouse clicking the element
#' @param WIGMouseClickLineStrokeColor Stroke color when mouse clicking the element
#' @param WIGMouseClickLineStrokeWidth Stroke width when mouse clicking the element
#' @param WIGMouseClickFillColor Filling color when mouse clicking the element
#' @param WIGMouseDownDisplay Default False, show/not the tooltip when mouse click down a WIG point.
#' @param WIGMouseDownLineOpacity Line opacity when mouse moving down the element
#' @param WIGMouseDownLineStrokeColor Stroke color when mouse moving down the element
#' @param WIGMouseDownLineStrokeWidth Stroke width when mouse moving down the element
#' @param WIGMouseDownFillColor Filling color when mouse moving down the element
#' @param WIGMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a WIG point.
#' @param WIGMouseEnterLineOpacity Line opacity when mouse entering the element
#' @param WIGMouseEnterLineStrokeColor Stroke color when mouse entering the element
#' @param WIGMouseEnterLineStrokeWidth Stroke width when mouse entering the element
#' @param WIGMouseEnterFillColor Filling color when mouse entering the element
#' @param WIGMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a WIG point.
#' @param WIGMouseLeaveLineOpacity Line opacity when mouse leaving the element
#' @param WIGMouseLeaveLineStrokeColor Stroke color when mouse leaving the element
#' @param WIGMouseLeaveLineStrokeWidth Stroke width when mouse leaving the element
#' @param WIGMouseLeaveFillColor Filling color when mouse leaving the element
#' @param WIGMouseMoveDisplay Default False, show/not the tooltip when mouse move into a WIG point.
#' @param WIGMouseMoveLineOpacity Line opacity when mouse moving in the element
#' @param WIGMouseMoveLineStrokeColor Stroke color when mouse moving in the element
#' @param WIGMouseMoveLineStrokeWidth Stroke width when mouse moving in the element
#' @param WIGMouseMoveFillColor Filling color when mouse leaving the element
#' @param WIGMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a WIG point anymore.
#' @param WIGMouseOutAnimationTime Animation time when mouse moving out the element
#' @param WIGMouseOutLineOpacity Line opacity when mouse moving out the element
#' @param WIGMouseOutLineStrokeColor Stroke color when mouse moving out the element
#' @param WIGMouseOutLineStrokeWidth Stroke width when mouse moving out the element
#' @param WIGMouseOutFillColor Filling color when mouse moving out the element
#' @param WIGMouseUpDisplay Default False, show/not the tooltip when mouse click up a WIG point.
#' @param WIGMouseUpLineOpacity Line opacity when mouse moving up the element
#' @param WIGMouseUpLineStrokeColor Stroke color when mouse moving up the element
#' @param WIGMouseUpLineStrokeWidth Stroke width when mouse moving up the element
#' @param WIGMouseUpFillColor Filling color when mouse moving up the element
#' @param WIGMouseOverDisplay Default False, show/not the tooltip when mouse hover on a WIG point.
#' @param WIGMouseOverLineOpacity Line opacity when mouse moving over the element
#' @param WIGMouseOverLineStrokeColor Stroke color when mouse moving over the element
#' @param WIGMouseOverLineStrokeWidth Stroke width when mouse moving over the element
#' @param WIGMouseOverFillColor Filling color when mouse moving over the element
#' @param WIGMouseOverTooltipsSetting Default "style1"
#' @param WIGMouseOverTooltipsHtml Default " "
#' @param WIGMouseOverTooltipsPosition Default "absolute"
#' @param WIGMouseOverTooltipsBackgroundColor Default "white"
#' @param WIGMouseOverTooltipsBorderStyle Default "solid"
#' @param WIGMouseOverTooltipsBorderWidth Default 0
#' @param WIGMouseOverTooltipsPadding Default "3px"
#' @param WIGMouseOverTooltipsBorderRadius Default "3px"
#' @param WIGMouseOverTooltipsOpacity Default 0.8
#'
#' @param SCATTERxlink Default False, add/not xlink for SCATTER module
#' @param SCATTERMouseEvent Default True, open/not open mouse event of SCATTER module
#' @param SCATTERMouseClickDisplay Default False, show/not the tooltip when mouse click on a SCATTER point.
#' @param SCATTERMouseClickColor Color when mouse clicking  the element
#' @param SCATTERMouseClickCircleSize Circle size when mouse clicking the element
#' @param SCATTERMouseClickCircleOpacity Circle opacity when mouse clicking the element
#' @param SCATTERMouseClickCircleStrokeColor Circle stroke color when mouse clicking the element
#' @param SCATTERMouseClickCircleStrokeWidth Circle stroke width when mouse clicking the element
#' @param SCATTERMouseClickTextFromData Text column when mouse clicking the element
#' @param SCATTERMouseClickTextOpacity Text opacity when mouse clicking the element
#' @param SCATTERMouseClickTextColor Text color when mouse clicking the element
#' @param SCATTERMouseClickTextSize Text size when mouse clicking the element
#' @param SCATTERMouseClickTextPostionX,SCATTERMouseClickTextPostionY Text coordinates when mouse clicking the element
#' @param SCATTERMouseClickTextDrag Whether text is draggable when clicing element
#' @param SCATTERMouseUpDisplay Default False, show/not the tooltip when mouse click up a SCATTER point.
#' @param SCATTERMouseUpColor Color when mouse moving up the element
#' @param SCATTERMouseUpCircleSize Circle size when mouse moving up the element
#' @param SCATTERMouseUpCircleOpacity Circle opacity when mouse moving up the element
#' @param SCATTERMouseUpCircleStrokeColor Circle stroke color when mouse moving up the element
#' @param SCATTERMouseUpCircleStrokeWidth Circle stroke width when mouse moving up the element
#' @param SCATTERMouseDownDisplay Default False, show/not the tooltip when mouse click down a SCATTER point.
#' @param SCATTERMouseDownColor Color when mouse moving down the element
#' @param SCATTERMouseDownCircleSize Circle size when mouse moving down the element
#' @param SCATTERMouseDownCircleOpacity Circle opacity when mouse moving down the element
#' @param SCATTERMouseDownCircleStrokeColor Circle stroke color when mouse moving down the element
#' @param SCATTERMouseDownCircleStrokeWidth Circle stroke width when mouse moving down the element
#' @param SCATTERMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a SCATTER point.
#' @param SCATTERMouseEnterColor Color when mouse entering the element
#' @param SCATTERMouseEnterCircleSize Circle size when mouse entering the element
#' @param SCATTERMouseEnterCircleOpacity Circle opacity when mouse entering the element
#' @param SCATTERMouseEnterCircleStrokeColor Circle stroke color when mouse entering the element
#' @param SCATTERMouseEnterCircleStrokeWidth Circle stroke width when mouse entering the element
#' @param SCATTERMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a SCATTER point.
#' @param SCATTERMouseLeaveColor Color when mouse leaving the element
#' @param SCATTERMouseLeaveCircleSize Circle size when mouse leaving the element
#' @param SCATTERMouseLeaveCircleOpacity Circle opacity when mouse leaving the element
#' @param SCATTERMouseLeaveCircleStrokeColor Circle stroke color when mouse leaving the element
#' @param SCATTERMouseLeaveCircleStrokeWidth Circle stroke width when mouse leaving the element
#' @param SCATTERMouseMoveDisplay Default False, show/not the tooltip when mouse move into a SCATTER point.
#' @param SCATTERMouseMoveColor Color when mouse moving in the element
#' @param SCATTERMouseMoveCircleSize Circle size when mouse moving in the element
#' @param SCATTERMouseMoveCircleOpacity Circle opacity when mouse moving in the element
#' @param SCATTERMouseMoveCircleStrokeColor Circle stroke color when mouse moving in the element
#' @param SCATTERMouseMoveCircleStrokeWidth Circle stroke width when mouse moving in the element
#' @param SCATTERMouseOverDisplay Default False, show/not the tooltip when mouse hover on a SCATTER point.
#' @param SCATTERMouseOverColor Color when mouse moving over the element
#' @param SCATTERMouseOverCircleSize Circle size when mouse moving over the element
#' @param SCATTERMouseOverCircleOpacity Circle opacity when mouse moving over the element
#' @param SCATTERMouseOverCircleStrokeColor Circle stroke color when mouse moving over the element
#' @param SCATTERMouseOverCircleStrokeWidth Circle stroke width when mouse moving over the element
#' @param SCATTERMouseOverTooltipsSetting Default "style1"
#' @param SCATTERMouseOverTooltipsHtml Default " "
#' @param SCATTERMouseOverTooltipsPosition Default "absolute"
#' @param SCATTERMouseOverTooltipsBackgroundColor Default "white"
#' @param SCATTERMouseOverTooltipsBorderStyle Default "solid"
#' @param SCATTERMouseOverTooltipsBorderWidth Default 0
#' @param SCATTERMouseOverTooltipsPadding Default "3px"
#' @param SCATTERMouseOverTooltipsBorderRadius Default "3px"
#' @param SCATTERMouseOverTooltipsOpacity Default 0.8
#' @param SCATTERMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a SCATTER point anymore.
#' @param SCATTERMouseOutAnimationTime Animation time when mouse moving out the element
#' @param SCATTERMouseOutColor Color when mouse moving out the element
#' @param SCATTERMouseOutCircleSize Circle size when mouse moving out the element
#' @param SCATTERMouseOutCircleOpacity Circle opacity when mouse moving out the element
#' @param SCATTERMouseOutCircleStrokeColor Circle stroke color when mouse moving out the element
#' @param SCATTERMouseOutCircleStrokeWidth Circle stroke width when mouse moving out the element
#'
#' @param ARCxlink Default False, add/not xlink for ARC module
#' @param ARCMouseEvent Default True, open/not open mouse event of ARC module
#' @param ARCMouseClickDisplay Default False, show/not the tooltip when mouse click on a ARC point.
#' @param ARCMouseClickColor Color when mouse clicking the element
#' @param ARCMouseClickArcOpacity Arc opacity when mouse clicking the element
#' @param ARCMouseClickArcStrokeColor Arc stroke color when mouse clicking the element
#' @param ARCMouseClickArcStrokeWidth Arc stroke width when mouse clicking the element
#' @param ARCMouseClickTextFromData Text column when mouse clicking the element
#' @param ARCMouseClickTextOpacity Text opacity when mouse clicking the element
#' @param ARCMouseClickTextColor Text color when mouse clicking the element
#' @param ARCMouseClickTextSize Text size when mouse clicking the element
#' @param ARCMouseClickTextPostionX,ARCMouseClickTextPostionY Text coordinates when mouse clicking the element
#' @param ARCMouseClickTextDrag Whether text is draggable when mouse clicking the element
#' @param ARCMouseUpDisplay Default False, show/not the tooltip when mouse click up a ARC point.
#' @param ARCMouseUpColor Color when mouse moving up the element
#' @param ARCMouseUpArcOpacity Arc opacity when mouse moving up the element
#' @param ARCMouseUpArcStrokeColor Arc stroke color when mouse moving up the element
#' @param ARCMouseUpArcStrokeWidth Arc stroke width when mouse moving up the element
#' @param ARCMouseDownDisplay Default False, show/not the tooltip when mouse click down a ARC point.
#' @param ARCMouseDownColor Color when mouse moving down the element
#' @param ARCMouseDownArcOpacity Arc opacity when mouse moving down the element
#' @param ARCMouseDownArcStrokeColor Arc stroke color when mouse moving down the element
#' @param ARCMouseDownArcStrokeWidth Arc stroke width when mouse moving down the element
#' @param ARCMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a ARC point.
#' @param ARCMouseEnterColor Color when mouse entering the element
#' @param ARCMouseEnterArcOpacity Arc opacity when mouse entering the element
#' @param ARCMouseEnterArcStrokeColor Arc stroke color when mouse entering the element
#' @param ARCMouseEnterArcStrokeWidth Arc stroke width when mouse entering the element
#' @param ARCMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a ARC point.
#' @param ARCMouseLeaveColor Color when mouse leaving the element
#' @param ARCMouseLeaveArcOpacity Arc opacity when mouse leaving the element
#' @param ARCMouseLeaveArcStrokeColor Arc stroke color when mouse leaving the element
#' @param ARCMouseLeaveArcStrokeWidth Arc stroke width when mouse leaving the element
#' @param ARCMouseMoveDisplay Default False, show/not the tooltip when mouse move into a ARC point.
#' @param ARCMouseMoveColor Color when mouse moving in the element
#' @param ARCMouseMoveArcOpacity Arc opacity when mouse moving in the element
#' @param ARCMouseMoveArcStrokeColor Arc stroke color when mouse moving in the element
#' @param ARCMouseMoveArcStrokeWidth Arc stroke width when mouse moving in the element
#' @param ARCMouseOverDisplay Default False, show/not the tooltip when mouse hover on a ARC point.
#' @param ARCMouseOverColor Color when mouse moving over the element
#' @param ARCMouseOverArcOpacity Arc opacity when mouse moving over the element
#' @param ARCMouseOverArcStrokeColor Arc stroke color when mouse moving over the element
#' @param ARCMouseOverArcStrokeWidth Arc stroke width when mouse moving over the element
#' @param ARCMouseOverTooltipsSetting Default "style1"
#' @param ARCMouseOverTooltipsHtml Default " "
#' @param ARCMouseOverTooltipsPosition Default "absolute"
#' @param ARCMouseOverTooltipsBackgroundColor Default "white"
#' @param ARCMouseOverTooltipsBorderStyle Default "solid"
#' @param ARCMouseOverTooltipsBorderWidth Default 0
#' @param ARCMouseOverTooltipsPadding Default "3px"
#' @param ARCMouseOverTooltipsBorderRadius Default "3px"
#' @param ARCMouseOverTooltipsOpacity Default 0.8
#' @param ARCMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a ARC point anymore.
#' @param ARCMouseOutAnimationTime Animation time when mouse moving out the element
#' @param ARCMouseOutColor Color when mouse moving out the element
#' @param ARCMouseOutArcOpacity Arc opacity when mouse moving out the element
#' @param ARCMouseOutArcStrokeColor Arc stroke color when mouse moving out the element
#' @param ARCMouseOutArcStrokeWidth Arc stroke width when mouse moving out the element
#'
#' @param GENExlink Default False, add/not xlink for GENE module
#' @param GENEMouseEvent Default True, open/not open mouse event of GENE module
#' @param GENEMouseClickDisplay Default False, show/not the tooltip when mouse click on a GENE point.
#' @param GENEMouseClickColor Color when mouse clicking the element
#' @param GENEMouseClickArcOpacity Arc opacity when mouse clicking the element
#' @param GENEMouseClickArcStrokeColor Arc stroke color when mouse clicking the element
#' @param GENEMouseClickArcStrokeWidth Arc stroke width when mouse clicking the element
#' @param GENEMouseClickTextFromData Text column when mouse clicking the element
#' @param GENEMouseClickTextOpacity Text opacity when mouse clicking the element
#' @param GENEMouseClickTextColor Text color when mouse clicking the element
#' @param GENEMouseClickTextSize Text size when mouse clicking the element
#' @param GENEMouseClickTextPostionX,GENEMouseClickTextPostionY Text coordinates when mouse clicking the element
#' @param GENEMouseClickTextDrag Whether text is draggable when mouse clicking the element
#' @param GENEMouseUpDisplay Default False, show/not the tooltip when mouse click up a GENE point.
#' @param GENEMouseUpColor Color when mouse moving up the element
#' @param GENEMouseUpArcOpacity Arc opacity when mouse moving up the element
#' @param GENEMouseUpArcStrokeColor Arc stroke color when mouse moving up the element
#' @param GENEMouseUpArcStrokeWidth Arc stroke width when mouse moving up the element
#' @param GENEMouseDownDisplay Default False, show/not the tooltip when mouse click down a GENE point.
#' @param GENEMouseDownColor Color when mouse moving down the element
#' @param GENEMouseDownArcOpacity Arc opacity when mouse moving down the element
#' @param GENEMouseDownArcStrokeColor Arc stroke color when mouse moving down the element
#' @param GENEMouseDownArcStrokeWidth Arc stroke width when mouse moving down the element
#' @param GENEMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a GENE point.
#' @param GENEMouseEnterColor Color when mouse entering the element
#' @param GENEMouseEnterArcOpacity Arc opacity when mouse entering the element
#' @param GENEMouseEnterArcStrokeColor Arc stroke color when mouse entering the element
#' @param GENEMouseEnterArcStrokeWidth Arc stroke width when mouse entering the element
#' @param GENEMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a GENE point.
#' @param GENEMouseLeaveColor Color when mouse leaving the element
#' @param GENEMouseLeaveArcOpacity Arc opacity when mouse leaving the element
#' @param GENEMouseLeaveArcStrokeColor Arc stroke color when mouse leaving the element
#' @param GENEMouseLeaveArcStrokeWidth Arc stroke width when mouse leaving the element
#' @param GENEMouseMoveDisplay Default False, show/not the tooltip when mouse move into a GENE point.
#' @param GENEMouseMoveColor Color when mouse moving in the element
#' @param GENEMouseMoveArcOpacity Arc opacity when mouse moving in the element
#' @param GENEMouseMoveArcStrokeColor Arc stroke color when mouse moving in the element
#' @param GENEMouseMoveArcStrokeWidth Arc stroke width when mouse moving in the element
#' @param GENEMouseOverDisplay Default False, show/not the tooltip when mouse hover on a GENE point.
#' @param GENEMouseOverColor Color when mouse moving over the element
#' @param GENEMouseOverArcOpacity Arc opacity when mouse moving over the element
#' @param GENEMouseOverArcStrokeColor Arc stroke color when mouse moving over the element
#' @param GENEMouseOverArcStrokeWidth Arc stroke width when mouse moving over the element
#' @param GENEMouseOverTooltipsSetting Default "style1"
#' @param GENEMouseOverTooltipsHtml Default " "
#' @param GENEMouseOverTooltipsPosition Default "absolute"
#' @param GENEMouseOverTooltipsBackgroundColor Default "white"
#' @param GENEMouseOverTooltipsBorderStyle Default "solid"
#' @param GENEMouseOverTooltipsBorderWidth Default 0
#' @param GENEMouseOverTooltipsPadding Default "3px"
#' @param GENEMouseOverTooltipsBorderRadius Default "3px"
#' @param GENEMouseOverTooltipsOpacity Default 0.8
#' @param GENEMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a GENE point anymore.
#' @param GENEMouseOutAnimationTime Animation time when mouse moving out the element
#' @param GENEMouseOutColor Color when mouse moving out the element
#' @param GENEMouseOutArcOpacity Arc opacity when mouse moving out the element
#' @param GENEMouseOutArcStrokeColor Arc stroke color when mouse moving out the element
#' @param GENEMouseOutArcStrokeWidth Arc stroke width when mouse moving out the element
#'
#' @param LOLLIPOPxlink Default False, add/not xlink for LOLLIPOP module
#' @param LOLLIPOPMouseEvent Default True, open/not open mouse event of LOLLIPOP module
#' @param LOLLIPOPMouseClickDisplay Default False, show/not the tooltip when mouse click on a LOLLIPOP point.
#' @param LOLLIPOPMouseClickColor Color when mouse clicking
#' @param LOLLIPOPMouseClickCircleSize Circle size when mouse clicking the element
#' @param LOLLIPOPMouseClickCircleOpacity Circle opacity when mouse clicking the element
#' @param LOLLIPOPMouseClickCircleStrokeColor Circle stroke color when mouse clicking the element
#' @param LOLLIPOPMouseClickCircleStrokeWidth Circle stroke width when mouse clicking the element
#' @param LOLLIPOPMouseClickTextFromData Text column when mouse clicking the element
#' @param LOLLIPOPMouseClickTextOpacity Text opacity when mouse clicking the element
#' @param LOLLIPOPMouseClickTextColor Text color when mouse clicking the element
#' @param LOLLIPOPMouseClickTextSize Text size when mouse clicking the element
#' @param LOLLIPOPMouseClickTextPostionX,LOLLIPOPMouseClickTextPostionY Text coordinates when mouse clicking the element
#' @param LOLLIPOPMouseClickTextDrag Whether text is draggable when mouse clicking the element
#' @param LOLLIPOPMouseUpDisplay Default False, show/not the tooltip when mouse click up a LOLLIPOP point.
#' @param LOLLIPOPMouseUpColor Color when mouse moving up the element
#' @param LOLLIPOPMouseUpCircleSize Circle size when mouse moving up the element
#' @param LOLLIPOPMouseUpCircleOpacity Circle opacity when mouse moving up the element
#' @param LOLLIPOPMouseUpCircleStrokeColor Circle stroke color when mouse moving up the element
#' @param LOLLIPOPMouseUpCircleStrokeWidth Circle stroke width when mouse moving up the element
#' @param LOLLIPOPMouseDownDisplay Default False, show/not the tooltip when mouse click down a LOLLIPOP point.
#' @param LOLLIPOPMouseDownColor Color when mouse moving down the element
#' @param LOLLIPOPMouseDownCircleSize Circle size when mouse moving down the element
#' @param LOLLIPOPMouseDownCircleOpacity Circle opacity when mouse moving down the element
#' @param LOLLIPOPMouseDownCircleStrokeColor Circle stroke color when mouse moving down the element
#' @param LOLLIPOPMouseDownCircleStrokeWidth Circle stroke width when mouse moving down the element
#' @param LOLLIPOPMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a LOLLIPOP point.
#' @param LOLLIPOPMouseEnterColor Color when mouse entering the element
#' @param LOLLIPOPMouseEnterCircleSize Circle size when mouse entering the element
#' @param LOLLIPOPMouseEnterCircleOpacity Circle opacity when mouse entering the element
#' @param LOLLIPOPMouseEnterCircleStrokeColor Circle stroke color when mouse entering the element
#' @param LOLLIPOPMouseEnterCircleStrokeWidth Circle stroke width when mouse entering the element
#' @param LOLLIPOPMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a LOLLIPOP point.
#' @param LOLLIPOPMouseLeaveColor Color when mouse leaving the element
#' @param LOLLIPOPMouseLeaveCircleSize Circle size when mouse leaving the element
#' @param LOLLIPOPMouseLeaveCircleOpacity Circle opacity when mouse leaving the element
#' @param LOLLIPOPMouseLeaveCircleStrokeColor Circle stroke color when mouse leaving the element
#' @param LOLLIPOPMouseLeaveCircleStrokeWidth Circle stroke width when mouse leaving the element
#' @param LOLLIPOPMouseMoveDisplay Default False, show/not the tooltip when mouse move into a LOLLIPOP point.
#' @param LOLLIPOPMouseMoveColor Color when mouse moving in the element
#' @param LOLLIPOPMouseMoveCircleSize Circle size when mouse moving in the element
#' @param LOLLIPOPMouseMoveCircleOpacity Circle opacity when mouse moving in the element
#' @param LOLLIPOPMouseMoveCircleStrokeColor Circle stroke color when mouse moving in the element
#' @param LOLLIPOPMouseMoveCircleStrokeWidth Circle stroke width when mouse moving in the element
#' @param LOLLIPOPMouseOverDisplay Default False, show/not the tooltip when mouse hover on a LOLLIPOP point.
#' @param LOLLIPOPMouseOverColor Color when mouse moving over the element
#' @param LOLLIPOPMouseOverCircleSize Circle size when mouse moving over the element
#' @param LOLLIPOPMouseOverCircleOpacity Circle opacity when mouse moving over the element
#' @param LOLLIPOPMouseOverCircleStrokeColor Circle stroke color when mouse moving over the element
#' @param LOLLIPOPMouseOverCircleStrokeWidth Circle stroke width when mouse moving over the element
#' @param LOLLIPOPMouseOverTooltipsSetting Default "style1"
#' @param LOLLIPOPMouseOverTooltipsHtml Default " "
#' @param LOLLIPOPMouseOverTooltipsPosition Default "absolute"
#' @param LOLLIPOPMouseOverTooltipsBackgroundColor Default "white"
#' @param LOLLIPOPMouseOverTooltipsBorderStyle Default "solid"
#' @param LOLLIPOPMouseOverTooltipsBorderWidth Default 0
#' @param LOLLIPOPMouseOverTooltipsPadding Default "3px"
#' @param LOLLIPOPMouseOverTooltipsBorderRadius Default "3px"
#' @param LOLLIPOPMouseOverTooltipsOpacity Default 0.8
#' @param LOLLIPOPMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a LOLLIPOP point anymore.
#' @param LOLLIPOPMouseOutAnimationTime Animation time when mouse moving out the element
#' @param LOLLIPOPMouseOutColor Color when mouse moving out the element
#' @param LOLLIPOPMouseOutCircleSize Circle size when mouse moving out the element
#' @param LOLLIPOPMouseOutCircleOpacity Circle opacity when mouse moving out the element
#' @param LOLLIPOPMouseOutCircleStrokeColor Circle stroke color when mouse moving out the element
#' @param LOLLIPOPMouseOutCircleStrokeWidth Circle stroke width when mouse moving out the element
#'
#' @param CNVxlink Default False, add/not xlink for CNV module
#' @param CNVMouseEvent Default True, open/not open mouse event of CNV module
#' @param CNVMouseClickDisplay Default False, show/not the tooltip when mouse click on a CNV point.
#' @param CNVMouseClickColor Color when mouse clicking
#' @param CNVMouseClickArcOpacity Arc opacity when mouse clicking the element
#' @param CNVMouseClickArcStrokeColor Arc stroke color when mouse clicking the element
#' @param CNVMouseClickArcStrokeWidth Arc stroke width when mouse clicking the element
#' @param CNVMouseClickTextFromData Text column when mouse clicking the element
#' @param CNVMouseClickTextOpacity Text opacity when mouse clicking the element
#' @param CNVMouseClickTextColor Text color when mouse clicking the element
#' @param CNVMouseClickTextSize Text size when mouse clicking the element
#' @param CNVMouseClickTextPostionX,CNVMouseClickTextPostionY Text coordinates when mouse clicking the element
#' @param CNVMouseClickTextDrag Whether text is draggable when mouse clicking the element
#' @param CNVMouseUpDisplay Default False, show/not the tooltip when mouse click up a CNV point.
#' @param CNVMouseUpColor Color when mouse moving up the element
#' @param CNVMouseUpArcOpacity Arc opacity when mouse clicking the element
#' @param CNVMouseUpArcStrokeColor Arc stroke color when mouse clicking the element
#' @param CNVMouseUpArcStrokeWidth Arc stroke width when mouse clicking the element
#' @param CNVMouseDownDisplay Default False, show/not the tooltip when mouse click down a CNV point.
#' @param CNVMouseDownColor Color when mouse moving down the element
#' @param CNVMouseDownArcOpacity Arc opacity when mouse moving down the element
#' @param CNVMouseDownArcStrokeColor Arc stroke color when mouse moving down the element
#' @param CNVMouseDownArcStrokeWidth Arc stroke width when mouse moving down the element
#' @param CNVMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a CNV point.
#' @param CNVMouseEnterColor Color when mouse entering the element
#' @param CNVMouseEnterArcOpacity Arc opacity when mouse entering the element
#' @param CNVMouseEnterArcStrokeColor Arc stroke color when mouse entering the element
#' @param CNVMouseEnterArcStrokeWidth Arc stroke width when mouse entering the element
#' @param CNVMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a CNV point.
#' @param CNVMouseLeaveColor Color when mouse leaving the element
#' @param CNVMouseLeaveArcOpacity Arc opacity when mouse leaving the element
#' @param CNVMouseLeaveArcStrokeColor Arc stroke color when mouse leaving the element
#' @param CNVMouseLeaveArcStrokeWidth Arc stroke width when mouse leaving the element
#' @param CNVMouseMoveDisplay Default False, show/not the tooltip when mouse move into a CNV point.
#' @param CNVMouseMoveColor Color when mouse moving in the element
#' @param CNVMouseMoveArcOpacity Arc opacity when mouse moving in the element
#' @param CNVMouseMoveArcStrokeColor Arc stroke color when mouse moving in the element
#' @param CNVMouseMoveArcStrokeWidth Arc stroke width when mouse moving in the element
#' @param CNVMouseOverDisplay Default False, show/not the tooltip when mouse hover on a CNV point.
#' @param CNVMouseOverColor Color when mouse moving over the element
#' @param CNVMouseOverArcOpacity Arc opacity when mouse moving over the element
#' @param CNVMouseOverArcStrokeColor Arc stroke color when mouse moving over the element
#' @param CNVMouseOverArcStrokeWidth Arc stroke width when mouse moving over the element
#' @param CNVMouseOverTooltipsSetting Default "style1"
#' @param CNVMouseOverTooltipsHtml Default " "
#' @param CNVMouseOverTooltipsPosition Default "absolute"
#' @param CNVMouseOverTooltipsBackgroundColor Default "white"
#' @param CNVMouseOverTooltipsBorderStyle Default "solid"
#' @param CNVMouseOverTooltipsBorderWidth Default 0
#' @param CNVMouseOverTooltipsPadding Default "3px"
#' @param CNVMouseOverTooltipsBorderRadius Default "3px"
#' @param CNVMouseOverTooltipsOpacity Default 0.8
#' @param CNVMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a CNV point anymore.
#' @param CNVMouseOutAnimationTime Animation time when mouse moving out the element
#' @param CNVMouseOutColor Color when mouse moving out the element
#' @param CNVMouseOutArcOpacity Arc opacity when mouse moving out the element
#' @param CNVMouseOutArcStrokeColor Arc stroke color when mouse moving out the element
#' @param CNVMouseOutArcStrokeWidth Arc stroke width when mouse moving out the element
#'
#' @param HEATMAPMouseEvent Default True, open/not open mouse event of HEATMAP module
#' @param HEATMAPMouseClickDisplay Default False, show/not the tooltip when mouse click on a HEATMAP point.
#' @param HEATMAPMouseClickColor Color when mouse clicking
#' @param HEATMAPMouseClickOpacity Opacity when mouse clicking
#' @param HEATMAPMouseClickStrokeColor Stroke color when mouse clicking
#' @param HEATMAPMouseClickStrokeWidth Stroke width when mouse clicking
#' @param HEATMAPMouseUpDisplay Default False, show/not the tooltip when mouse click up a HEATMAP point.
#' @param HEATMAPMouseUpColor Color when mouse moving up the element
#' @param HEATMAPMouseUpOpacity Opacity when mouse moving up the element
#' @param HEATMAPMouseUpStrokeColor Stroke color when mouse moving up the element
#' @param HEATMAPMouseUpStrokeWidth Stroke width when mouse moving up the element
#' @param HEATMAPMouseDownDisplay Default False, show/not the tooltip when mouse click down a HEATMAP point.
#' @param HEATMAPMouseDownColor Color when mouse moving down the element
#' @param HEATMAPMouseDownOpacity Opacity when mouse moving down the element
#' @param HEATMAPMouseDownStrokeColor Stroke color when mouse moving down the element
#' @param HEATMAPMouseDownStrokeWidth Stroke width when mouse moving down the element
#' @param HEATMAPMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a HEATMAP point.
#' @param HEATMAPMouseEnterColor Color when mouse entering the element
#' @param HEATMAPMouseEnterOpacity Opacity when mouse entering the element
#' @param HEATMAPMouseEnterStrokeColor Stroke color when mouse entering the element
#' @param HEATMAPMouseEnterStrokeWidth Stroke width when mouse entering the element
#' @param HEATMAPMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a HEATMAP point.
#' @param HEATMAPMouseLeaveColor Color when mouse leaving the element
#' @param HEATMAPMouseLeaveOpacity Opacity when mouse leaving the element
#' @param HEATMAPMouseLeaveStrokeColor Stroke color when mouse leaving the element
#' @param HEATMAPMouseLeaveStrokeWidth Stroke width when mouse leaving the element
#' @param HEATMAPMouseMoveDisplay Default False, show/not the tooltip when mouse move into a HEATMAP point.
#' @param HEATMAPMouseMoveColor Color when mouse moving in the element
#' @param HEATMAPMouseMoveOpacity Opacity when mouse moving in the element
#' @param HEATMAPMouseMoveStrokeColor Stroke color when mouse moving in the element
#' @param HEATMAPMouseMoveStrokeWidth Stroke width when mouse moving in the element
#' @param HEATMAPMouseOverDisplay Default False, show/not the tooltip when mouse hover on a HEATMAP point.
#' @param HEATMAPMouseOverColor Color when mouse moving over the element
#' @param HEATMAPMouseOverOpacity Opacity when mouse moving over the element
#' @param HEATMAPMouseOverStrokeColor Stroke color when mouse moving over the element
#' @param HEATMAPMouseOverStrokeWidth Stroke width when mouse moving over the element
#' @param HEATMAPMouseOverTooltipsSetting Default "style1"
#' @param HEATMAPMouseOverTooltipsHtml Default " "
#' @param HEATMAPMouseOverTooltipsPosition Default "absolute"
#' @param HEATMAPMouseOverTooltipsBackgroundColor Default "white"
#' @param HEATMAPMouseOverTooltipsBorderStyle Default "solid"
#' @param HEATMAPMouseOverTooltipsBorderWidth Default 0
#' @param HEATMAPMouseOverTooltipsPadding Default "3px"
#' @param HEATMAPMouseOverTooltipsBorderRadius Default "3px"
#' @param HEATMAPMouseOverTooltipsOpacity Default 0.8
#' @param HEATMAPMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a HEATMAP point anymore.
#' @param HEATMAPMouseOutAnimationTime Animation time when mouse moving out the element
#' @param HEATMAPMouseOutColor Color when mouse moving out the element
#' @param HEATMAPMouseOutOpacity Opacity when mouse moving out the element
#' @param HEATMAPMouseOutStrokeColor Stroke color when mouse moving out the element
#' @param HEATMAPMouseOutStrokeWidth Stroke width when mouse moving out the element
#'
#' @param BUBBLExlink Default False, add/not xlink for BUBBLE module
#' @param BUBBLEMouseEvent Default True, open/not open mouse event of BUBBLE module
#' @param BUBBLEMouseClickDisplay Default False, show/not the tooltip when mouse click on a BUBBLE point.
#' @param BUBBLEMouseClickColor Color when mouse clicking
#' @param BUBBLEMouseClickOpacity Opacity when mouse clicking
#' @param BUBBLEMouseClickStrokeColor Stroke color when mouse clicking
#' @param BUBBLEMouseClickStrokeWidth Stroke width when mouse clicking
#' @param BUBBLEMouseUpDisplay Default False, show/not the tooltip when mouse click up a BUBBLE point.
#' @param BUBBLEMouseUpColor Color when mouse moving up the element
#' @param BUBBLEMouseUpOpacity Opacity when mouse moving up the element
#' @param BUBBLEMouseUpStrokeColor Stroke color when mouse moving up the element
#' @param BUBBLEMouseUpStrokeWidth Stroke width when mouse moving up the element
#' @param BUBBLEMouseDownDisplay Default False, show/not the tooltip when mouse click down a BUBBLE point.
#' @param BUBBLEMouseDownColor Color when mouse moving down the element
#' @param BUBBLEMouseDownOpacity Opacity when mouse moving down the element
#' @param BUBBLEMouseDownStrokeColor Stroke color when mouse moving down the element
#' @param BUBBLEMouseDownStrokeWidth Stroke width when mouse moving down the element
#' @param BUBBLEMouseEnterDisplay Default False, show/not the tooltip when mouse mover over a BUBBLE point.
#' @param BUBBLEMouseEnterColor Color when mouse entering the element
#' @param BUBBLEMouseEnterOpacity Opacity when mouse entering the element
#' @param BUBBLEMouseEnterStrokeColor Stroke color when mouse entering the element
#' @param BUBBLEMouseEnterStrokeWidth Stroke width when mouse entering the element
#' @param BUBBLEMouseLeaveDisplay Default False, show/not the tooltip when mouse mover leave a BUBBLE point.
#' @param BUBBLEMouseLeaveColor Color when mouse leaving the element
#' @param BUBBLEMouseLeaveOpacity Opacity when mouse leaving the element
#' @param BUBBLEMouseLeaveStrokeColor Stroke color when mouse leaving the element
#' @param BUBBLEMouseLeaveStrokeWidth Stroke width when mouse leaving the element
#' @param BUBBLEMouseMoveDisplay Default False, show/not the tooltip when mouse move into a BUBBLE point.
#' @param BUBBLEMouseMoveColor Color when mouse moving in the element
#' @param BUBBLEMouseMoveOpacity Opacity when mouse moving in the element
#' @param BUBBLEMouseMoveStrokeColor Stroke color when mouse moving in the element
#' @param BUBBLEMouseMoveStrokeWidth Stroke width when mouse moving in the element
#' @param BUBBLEMouseOverDisplay Default False, show/not the tooltip when mouse hover on a BUBBLE point.
#' @param BUBBLEMouseOverColor Color when mouse moving over the element
#' @param BUBBLEMouseOverOpacity Opacity when mouse moving over the element
#' @param BUBBLEMouseOverStrokeColor Stroke color when mouse moving over the element
#' @param BUBBLEMouseOverStrokeWidth Stroke width when mouse moving over the element
#' @param BUBBLEMouseOverTooltipsSetting Default "style1"
#' @param BUBBLEMouseOverTooltipsHtml Default " "
#' @param BUBBLEMouseOverTooltipsPosition Default "absolute"
#' @param BUBBLEMouseOverTooltipsBackgroundColor Default "white"
#' @param BUBBLEMouseOverTooltipsBorderStyle Default "solid"
#' @param BUBBLEMouseOverTooltipsBorderWidth Default 0
#' @param BUBBLEMouseOverTooltipsPadding Default "3px"
#' @param BUBBLEMouseOverTooltipsBorderRadius Default "3px"
#' @param BUBBLEMouseOverTooltipsOpacity Default 0.8
#' @param BUBBLEMouseOutDisplay Defalut False, hide/not tooltip when mouse is not hovering a BUBBLE point anymore.
#' @param BUBBLEMouseOutAnimationTime Animation time when mouse moving out the element
#' @param BUBBLEMouseOutColor Color when mouse moving out the element
#' @param BUBBLEMouseOutOpacity Opacity when mouse moving out the element
#' @param BUBBLEMouseOutStrokeColor Stroke color when mouse moving out the element
#' @param BUBBLEMouseOutStrokeWidth Stroke width when mouse moving out the element
#'
#' @param elementId the name of the HTML id to be used to contain the visualization.
#'
#' @param ... Ignored
#'
#' @return The main figure for interacCircos with all tracks.
#'
#' @examples
#' Circos(genome = "hg19")
#'
#' @export
Circos <- function(moduleList = CircosModuleList(),
                     genome = "hg19", genome2 = "hg19", genomeFillColor = "Spectral", chrPad = 0.02, width = NULL, height = NULL,
                     innerRadius = 216, outerRadius=240, svgClassName = "interacCircos",
                     displayGenomeBorder = TRUE, genomeBorderColor = "#000", genomeBorderSize = 0.5,
                     genomeTicksDisplay = FALSE, genomeTicksLen = 5, genomeTicksColor = "#000", genomeTicksTextSize = "0.6em",
                     genomeTicksRealLength = TRUE, genomeTicksTextColor = "#000", genomeTicksScale = 30000000, genomeTicksOffset = 0,
                     genomeLabelDisplay = TRUE, genomeLabelTextSize = "10pt", genomeLabelTextColor = "#000",
                     genomeLabelDx = 0, genomeLabelDy = 0, compareEvent=FALSE,compareEventGroupGapRate=0.1,compareEventGroupDistance=0,
                     zoom = TRUE, TEXTModuleDragEvent = FALSE,
                     CNVxlink=FALSE, CNVMouseEvent = TRUE, CNVMouseClickDisplay = FALSE, CNVMouseClickColor = "red",
                     CNVMouseClickArcOpacity = 1, CNVMouseClickArcStrokeColor = "#F26223",
                     CNVMouseClickArcStrokeWidth = 0, CNVMouseClickTextFromData = "fourth",
                     CNVMouseClickTextOpacity = 1, CNVMouseClickTextColor = "red",
                     CNVMouseClickTextSize = 8, CNVMouseClickTextPostionX = 0, CNVMouseClickTextPostionY = 0,
                     CNVMouseClickTextDrag = TRUE, CNVMouseDownDisplay = FALSE, CNVMouseDownColor = "green",
                     CNVMouseDownArcOpacity = 1, CNVMouseDownArcStrokeColor = "#F26223", CNVMouseDownArcStrokeWidth = 0,
                     CNVMouseEnterDisplay = FALSE, CNVMouseEnterColor = "yellow", CNVMouseEnterArcOpacity = 1,
                     CNVMouseEnterArcStrokeColor = "#F26223", CNVMouseEnterArcStrokeWidth = 0,
                     CNVMouseLeaveDisplay = FALSE, CNVMouseLeaveColor = "pink", CNVMouseLeaveArcOpacity = 1,
                     CNVMouseLeaveArcStrokeColor = "#F26223", CNVMouseLeaveArcStrokeWidth = 0,
                     CNVMouseMoveDisplay = FALSE, CNVMouseMoveColor = "red", CNVMouseMoveArcOpacity = 1,
                     CNVMouseMoveArcStrokeColor = "#F26223", CNVMouseMoveArcStrokeWidth = 0,
                     CNVMouseOutDisplay = FALSE, CNVMouseOutAnimationTime = 500, CNVMouseOutColor = "red",
                     CNVMouseOutArcOpacity =1, CNVMouseOutArcStrokeColor = "red", CNVMouseOutArcStrokeWidth = 0,
                     CNVMouseUpDisplay = FALSE, CNVMouseUpColor = "grey", CNVMouseUpArcOpacity = 1,
                     CNVMouseUpArcStrokeColor = "#F26223", CNVMouseUpArcStrokeWidth = 0,
                     CNVMouseOverDisplay = FALSE, CNVMouseOverColor = "red", CNVMouseOverArcOpacity = 1,
                     CNVMouseOverArcStrokeColor = "#F26223", CNVMouseOverArcStrokeWidth = 3,
                     CNVMouseOverTooltipsSetting = "style1",CNVMouseOverTooltipsHtml = " ",
                     CNVMouseOverTooltipsPosition = "absolute", CNVMouseOverTooltipsBackgroundColor = "white",
                     CNVMouseOverTooltipsBorderStyle = "solid", CNVMouseOverTooltipsBorderWidth = 0,
                     CNVMouseOverTooltipsPadding = "3px", CNVMouseOverTooltipsBorderRadius = "3px",
                     CNVMouseOverTooltipsOpacity = 0.8,
                     HEATMAPMouseEvent = TRUE, HEATMAPMouseClickDisplay = FALSE, HEATMAPMouseClickColor = "green",
                     HEATMAPMouseClickOpacity = 1, HEATMAPMouseClickStrokeColor = "none",
                     HEATMAPMouseClickStrokeWidth = "none", HEATMAPMouseDownDisplay = FALSE,
                     HEATMAPMouseDownColor = "green", HEATMAPMouseDownOpacity = 1, HEATMAPMouseDownStrokeColor = "none",
                     HEATMAPMouseDownStrokeWidth = "none", HEATMAPMouseEnterDisplay = FALSE,
                     HEATMAPMouseEnterColor = "green", HEATMAPMouseEnterOpacity = 1, HEATMAPMouseEnterStrokeColor = "none",
                     HEATMAPMouseEnterStrokeWidth = "none", HEATMAPMouseLeaveDisplay = FALSE,
                     HEATMAPMouseLeaveColor = "green", HEATMAPMouseLeaveOpacity = 1, HEATMAPMouseLeaveStrokeColor = "none",
                     HEATMAPMouseLeaveStrokeWidth = "none", HEATMAPMouseMoveDisplay = FALSE,
                     HEATMAPMouseMoveColor = "green", HEATMAPMouseMoveOpacity = 1, HEATMAPMouseMoveStrokeColor = "none",
                     HEATMAPMouseMoveStrokeWidth = "none", HEATMAPMouseOutDisplay = FALSE,
                     HEATMAPMouseOutAnimationTime = 500, HEATMAPMouseOutColor = "green",
                     HEATMAPMouseOutOpacity = 1, HEATMAPMouseOutStrokeColor = "none",
                     HEATMAPMouseOutStrokeWidth = "none", HEATMAPMouseUpDisplay = FALSE, HEATMAPMouseUpColor = "green",
                     HEATMAPMouseUpOpacity = 1, HEATMAPMouseUpStrokeColor = "none", HEATMAPMouseUpStrokeWidth = "none",
                     HEATMAPMouseOverDisplay = FALSE, HEATMAPMouseOverColor = "none", HEATMAPMouseOverOpacity = 1,
                     HEATMAPMouseOverStrokeColor = "none", HEATMAPMouseOverStrokeWidth = "none",
                     HEATMAPMouseOverTooltipsSetting = "style1", HEATMAPMouseOverTooltipsHtml = " ",
                     HEATMAPMouseOverTooltipsPosition = "absolute", HEATMAPMouseOverTooltipsBackgroundColor = "white",
                     HEATMAPMouseOverTooltipsBorderStyle = "solid", HEATMAPMouseOverTooltipsBorderWidth = 0,
                     HEATMAPMouseOverTooltipsPadding = "3px", HEATMAPMouseOverTooltipsBorderRadius = "3px",
                     HEATMAPMouseOverTooltipsOpacity = 0.8,
                     BUBBLExlink = FALSE, BUBBLEMouseEvent = TRUE, BUBBLEMouseClickDisplay = FALSE,
                     BUBBLEMouseClickColor = "green", BUBBLEMouseClickOpacity = 1, BUBBLEMouseClickStrokeColor = "none",
                     BUBBLEMouseClickStrokeWidth = "none", BUBBLEMouseDownDisplay = FALSE, BUBBLEMouseDownColor = "green",
                     BUBBLEMouseDownOpacity = 1, BUBBLEMouseDownStrokeColor = "none", BUBBLEMouseDownStrokeWidth = "none",
                     BUBBLEMouseEnterDisplay = FALSE, BUBBLEMouseEnterColor = "green", BUBBLEMouseEnterOpacity = 1,
                     BUBBLEMouseEnterStrokeColor = "none", BUBBLEMouseEnterStrokeWidth = "none",
                     BUBBLEMouseLeaveDisplay = FALSE, BUBBLEMouseLeaveColor = "green", BUBBLEMouseLeaveOpacity = 1,
                     BUBBLEMouseLeaveStrokeColor = "none", BUBBLEMouseLeaveStrokeWidth = "none",
                     BUBBLEMouseMoveDisplay = FALSE, BUBBLEMouseMoveColor = "green", BUBBLEMouseMoveOpacity = 1,
                     BUBBLEMouseMoveStrokeColor = "none", BUBBLEMouseMoveStrokeWidth = "none", BUBBLEMouseOutDisplay = FALSE,
                     BUBBLEMouseOutAnimationTime = 500, BUBBLEMouseOutColor = "green", BUBBLEMouseOutOpacity = 1,
                     BUBBLEMouseOutStrokeColor = "none", BUBBLEMouseOutStrokeWidth = "none",
                     BUBBLEMouseUpDisplay = FALSE, BUBBLEMouseUpColor = "green", BUBBLEMouseUpOpacity = 1,
                     BUBBLEMouseUpStrokeColor = "none", BUBBLEMouseUpStrokeWidth = "none",
                     BUBBLEMouseOverDisplay = FALSE, BUBBLEMouseOverColor = "green", BUBBLEMouseOverOpacity = 1,
                     BUBBLEMouseOverStrokeColor = "none", BUBBLEMouseOverStrokeWidth = "none",
                     BUBBLEMouseOverTooltipsSetting = "style1", BUBBLEMouseOverTooltipsHtml = " ",
                     BUBBLEMouseOverTooltipsPosition = "absolute", BUBBLEMouseOverTooltipsBackgroundColor = "white",
                     BUBBLEMouseOverTooltipsBorderStyle = "solid", BUBBLEMouseOverTooltipsBorderWidth = 0,
                     BUBBLEMouseOverTooltipsPadding = "3px", BUBBLEMouseOverTooltipsBorderRadius = "3px",
                     BUBBLEMouseOverTooltipsOpacity = 0.8,
                     SNPxlink = FALSE, SNPMouseEvent = TRUE, SNPMouseCombinationEvent = FALSE,
                     SNPMouseCombinationImageDisplay = FALSE, SNPMouseCombinationImageTitle = "This is image",
                     SNPMouseCombinationImageTitleSize = 5, SNPMouseCombinationImageTitleWeight = "bold",
                     SNPMouseCombinationImageTitleColor = "black", SNPMouseCombinationImagePositionX = 0,
                     SNPMouseCombinationImagePositionY = 0, SNPMouseCombinationImageHeight = 200,
                     SNPMouseCombinationImageWidth = 300, SNPMouseCombinationGraphDisplay = FALSE,
                     SNPMouseCombinationGraphTitle = "This is graph", SNPMouseCombinationGraphTitleSize = 5,
                     SNPMouseCombinationGraphTitleWeight = "bold", SNPMouseCombinationGraphTitleColor = "black",
                     SNPMouseCombinationGraphType = "histogram", SNPMouseCombinationGraphPositionX = 0,
                     SNPMouseCombinationGraphPositionY = 0, SNPMouseCombinationGraphHeight = 200,
                     SNPMouseCombinationGraphWidth = 300, SNPMouseCombinationGraphHistogramBarColor = "blue",
                     SNPMouseCombinationGraphHistogramPadding = 30, SNPMouseCombinationGraphHistogramPositionCorrectX = 0,
                     SNPMouseCombinationGraphPieAutoColor = TRUE, SNPMouseCombinationGraphPieColor = c("blue","orange"),
                     SNPMouseCombinationGraphPieSize = 50, SNPMouseCombinationGraphPieStroke = TRUE,
                     SNPMouseCombinationGraphPieStrokeColor = "black", SNPMouseCombinationGraphPieStrokeWidth = 1,
                     SNPMouseCombinationGraphPieOpacity = 1, SNPMouseCombinationGraphLineType = "linear",
                     SNPMouseCombinationGraphLineColor = "black", SNPMouseCombinationGraphLineWidth = 1,
                     SNPMouseCombinationGraphLinePoint = FALSE, SNPMouseCombinationGraphLinePointSize = 5,
                     SNPMouseCombinationGraphLinePointAutoColor = TRUE, SNPMouseCombinationGraphLinePointColor = c("blue","orange"),
                     SNPMouseCombinationGraphLinePointStroke = TRUE, SNPMouseCombinationGraphLinePointStrokeColor = "black",
                     SNPMouseCombinationGraphLinePointStrokeWidth = 1, SNPMouseCombinationGraphLinePointOpacity = 1,
                     SNPMouseCombinationGraphLinePositionCorrectX = 0, SNPMouseCombinationTextDisplay = FALSE,
                     SNPMouseCombinationTextColor = "red", SNPMouseCombinationTextSize = 3, SNPMouseCombinationTextWeight = "bold",
                     SNPMouseCombinationTextPositionCorrectX = 0, SNPMouseCombinationTextPositionCorrectY = 0,
                     SNPMouseClickDisplay = FALSE, SNPMouseClickColor = "red", SNPMouseClickCircleSize = 4,
                     SNPMouseClickCircleOpacity = 1, SNPMouseClickCircleStrokeColor = "#F26223",
                     SNPMouseClickCircleStrokeWidth = 0, SNPMouseClickTextFromData = "fourth", SNPMouseClickTextOpacity = 1,
                     SNPMouseClickTextColor = "red", SNPMouseClickTextSize = 8, SNPMouseClickTextPostionX = 1,
                     SNPMouseClickTextPostionY = 10, SNPMouseClickTextDrag = TRUE, SNPMouseDownDisplay = FALSE,
                     SNPMouseDownColor = "green", SNPMouseDownCircleSize = 4, SNPMouseDownCircleOpacity = 1,
                     SNPMouseDownCircleStrokeColor = "#F26223", SNPMouseDownCircleStrokeWidth = 0,
                     SNPMouseEnterDisplay = FALSE, SNPMouseEnterColor = "yellow", SNPMouseEnterCircleSize = 4,
                     SNPMouseEnterCircleOpacity = 1, SNPMouseEnterCircleStrokeColor = "#F26223", SNPMouseEnterCircleStrokeWidth = 0,
                     SNPMouseLeaveDisplay = FALSE, SNPMouseLeaveColor = "pink", SNPMouseLeaveCircleSize = 4,
                     SNPMouseLeaveCircleOpacity = 1, SNPMouseLeaveCircleStrokeColor = "#F26223", SNPMouseLeaveCircleStrokeWidth = 0,
                     SNPMouseMoveDisplay = FALSE, SNPMouseMoveColor = "red", SNPMouseMoveCircleSize = 2,
                     SNPMouseMoveCircleOpacity = 1, SNPMouseMoveCircleStrokeColor = "#F26223", SNPMouseMoveCircleStrokeWidth = 0,
                     SNPMouseOutDisplay = FALSE, SNPMouseOutAnimationTime = 500, SNPMouseOutColor = "red",
                     SNPMouseOutCircleSize = 2, SNPMouseOutCircleOpacity = 1, SNPMouseOutCircleStrokeColor = "red",
                     SNPMouseOutCircleStrokeWidth = 0, SNPMouseUpDisplay = FALSE, SNPMouseUpColor = "grey",
                     SNPMouseUpCircleSize = 2, SNPMouseUpCircleOpacity = 1, SNPMouseUpCircleStrokeColor = "#F26223",
                     SNPMouseUpCircleStrokeWidth = 0, SNPMouseOverDisplay = FALSE, SNPMouseOverColor = "red",
                     SNPMouseOverCircleSize = 2, SNPMouseOverCircleOpacity = 1, SNPMouseOverCircleStrokeColor = "#F26223",
                     SNPMouseOverCircleStrokeWidth = 3, SNPMouseOverTooltipsSetting = "style1", SNPMouseOverTooltipsHtml = " ",
                     SNPMouseOverTooltipsPosition = "absolute", SNPMouseOverTooltipsBackgroundColor = "white",
                     SNPMouseOverTooltipsBorderStyle = "solid", SNPMouseOverTooltipsBorderWidth = 0,
                     SNPMouseOverTooltipsPadding = "3px", SNPMouseOverTooltipsBorderRadius = "3px",
                     SNPMouseOverTooltipsOpacity = 0.8,
                     LINKxlink = FALSE, LINKMouseEvent = TRUE, LINKMouseClickDisplay = FALSE, LINKMouseClickOpacity = 1,
                     LINKMouseClickStrokeColor = "green", LINKMouseClickStrokeWidth = 4, LINKMouseDownDisplay = FALSE,
                     LINKMouseDownOpacity = 1, LINKMouseDownStrokeColor = "none", LINKMouseDownStrokeWidth = "none",
                     LINKMouseEnterDisplay = FALSE, LINKMouseEnterOpacity = 1, LINKMouseEnterStrokeColor = "none",
                     LINKMouseEnterStrokeWidth = "none", LINKMouseLeaveDisplay = FALSE, LINKMouseLeaveOpacity = 1,
                     LINKMouseLeaveStrokeColor = "none", LINKMouseLeaveStrokeWidth = "none",
                     LINKMouseMoveDisplay = FALSE, LINKMouseMoveOpacity = 1, LINKMouseMoveStrokeColor = "none",
                     LINKMouseMoveStrokeWidth = "none", LINKMouseOutDisplay = FALSE, LINKMouseOutAnimationTime = 500,
                     LINKMouseOutOpacity = 1, LINKMouseOutStrokeColor = "none", LINKMouseOutStrokeWidth = "none",
                     LINKMouseUpDisplay = FALSE, LINKMouseUpOpacity = 1, LINKMouseUpStrokeColor = "none",
                     LINKMouseUpStrokeWidth = "none", LINKMouseOverDisplay = FALSE, LINKMouseOverOpacity = 1,
                     LINKMouseOverStrokeColor = "none", LINKMouseOverStrokeWidth = "none",
                     LINKMouseOverTooltipsSetting = "style1", LINKMouseOverTooltipsHtml = " ",
                     LINKMouseOverTooltipsPosition = "absolute", LINKMouseOverTooltipsBackgroundColor = "white",
                     LINKMouseOverTooltipsBorderStyle = "solid", LINKMouseOverTooltipsBorderWidth = 0,
                     LINKMouseOverTooltipsPadding = "3px", LINKMouseOverTooltipsBorderRadius = "3px",
                     LINKMouseOverTooltipsOpacity = 1, LINKLabelDragEvent = FALSE,
                     CHORDMouseEvent = TRUE, CHORDMouseFillColorExcluded = "#FFFFFF", CHORDMouseClickDisplay = FALSE,
                     CHORDMouseClickOpacity = 1, CHORDMouseClickStrokeColor = "none", CHORDMouseClickStrokeWidth = "none",
                     CHORDMouseDownDisplay = FALSE, CHORDMouseDownOpacity = 1, CHORDMouseDownStrokeColor = "none",
                     CHORDMouseDownStrokeWidth = "none", CHORDMouseEnterDisplay = FALSE,
                     CHORDMouseEnterOpacity = 1, CHORDMouseEnterStrokeColor = "none", CHORDMouseEnterStrokeWidth = "none",
                     CHORDMouseLeaveDisplay = FALSE, CHORDMouseLeaveOpacity = 1,
                     CHORDMouseLeaveStrokeColor = "none", CHORDMouseLeaveStrokeWidth = "none",
                     CHORDMouseMoveDisplay = FALSE, CHORDMouseMoveOpacity = 1,
                     CHORDMouseMoveStrokeColor = "none", CHORDMouseMoveStrokeWidth = "none",
                     CHORDMouseOutDisplay = FALSE, CHORDMouseOutAnimationTime = 500, CHORDMouseOutOpacity = 1,
                     CHORDMouseOutStrokeColor = "none", CHORDMouseOutStrokeWidth = "none",
                     CHORDMouseUpDisplay = FALSE, CHORDMouseUpOpacity = 1,
                     CHORDMouseUpStrokeColor = "none", CHORDMouseUpStrokeWidth = "none",
                     CHORDMouseOverDisplay = FALSE, CHORDMouseOverOpacity = 1,
                     CHORDMouseOverStrokeColor = "none", CHORDMouseOverStrokeWidth = "none",
                     HISTOGRAMxlink = FALSE, HISTOGRAMMouseEvent = TRUE,
                     HISTOGRAMMouseClickDisplay = FALSE, HISTOGRAMMouseClickColor = "red",
                     HISTOGRAMMouseClickOpacity = 1, HISTOGRAMMouseClickStrokeColor = "none",
                     HISTOGRAMMouseClickStrokeWidth = "none", HISTOGRAMMouseDownDisplay = FALSE,
                     HISTOGRAMMouseDownColor = "red", HISTOGRAMMouseDownOpacity = 1,
                     HISTOGRAMMouseDownStrokeColor = "none", HISTOGRAMMouseDownStrokeWidth = "none",
                     HISTOGRAMMouseEnterDisplay = FALSE, HISTOGRAMMouseEnterColor = "red",
                     HISTOGRAMMouseEnterOpacity = 1, HISTOGRAMMouseEnterStrokeColor = "none",
                     HISTOGRAMMouseEnterStrokeWidth = "none", HISTOGRAMMouseLeaveDisplay = FALSE,
                     HISTOGRAMMouseLeaveColor = "red", HISTOGRAMMouseLeaveOpacity = 1,
                     HISTOGRAMMouseLeaveStrokeColor = "none", HISTOGRAMMouseLeaveStrokeWidth = "none",
                     HISTOGRAMMouseMoveDisplay = FALSE, HISTOGRAMMouseMoveColor = "red",
                     HISTOGRAMMouseMoveOpacity = 1, HISTOGRAMMouseMoveStrokeColor = "none",
                     HISTOGRAMMouseMoveStrokeWidth = "none", HISTOGRAMMouseOutDisplay = FALSE,
                     HISTOGRAMMouseOutAnimationTime = 500, HISTOGRAMMouseOutColor = "red",
                     HISTOGRAMMouseOutOpacity = 1, HISTOGRAMMouseOutStrokeColor = "none",
                     HISTOGRAMMouseOutStrokeWidth = "none", HISTOGRAMMouseUpDisplay = FALSE,
                     HISTOGRAMMouseUpColor = "red", HISTOGRAMMouseUpOpacity = 1,
                     HISTOGRAMMouseUpStrokeColor = "none", HISTOGRAMMouseUpStrokeWidth = "none",
                     HISTOGRAMMouseOverDisplay = FALSE, HISTOGRAMMouseOverColor = "red",
                     HISTOGRAMMouseOverOpacity = 1, HISTOGRAMMouseOverStrokeColor = "none",
                     HISTOGRAMMouseOverStrokeWidth = "none", HISTOGRAMMouseOverTooltipsSetting = "style1",
                     HISTOGRAMMouseOverTooltipsHtml = " ", HISTOGRAMMouseOverTooltipsPosition = "absolute",
                     HISTOGRAMMouseOverTooltipsBackgroundColor = "white", HISTOGRAMMouseOverTooltipsBorderStyle = "solid",
                     HISTOGRAMMouseOverTooltipsBorderWidth = 0, HISTOGRAMMouseOverTooltipsPadding = "3px",
                     HISTOGRAMMouseOverTooltipsBorderRadius = "3px", HISTOGRAMMouseOverTooltipsOpacity = 1,
                     LINEMouseEvent = TRUE, LINEMouseClickDisplay = FALSE, LINEMouseClickLineOpacity = 1,
                     LINEMouseClickLineStrokeColor = "none", LINEMouseClickLineStrokeWidth = "none",
                     LINEMouseDownDisplay = FALSE, LINEMouseDownLineOpacity = 1,
                     LINEMouseDownLineStrokeColor = "none", LINEMouseDownLineStrokeWidth = "none",
                     LINEMouseEnterDisplay = FALSE, LINEMouseEnterLineOpacity = 1,
                     LINEMouseEnterLineStrokeColor = "none", LINEMouseEnterLineStrokeWidth = "none",
                     LINEMouseLeaveDisplay = FALSE, LINEMouseLeaveLineOpacity = 1,
                     LINEMouseLeaveLineStrokeColor = "none", LINEMouseLeaveLineStrokeWidth = "none",
                     LINEMouseMoveDisplay = FALSE, LINEMouseMoveLineOpacity = 1,
                     LINEMouseMoveLineStrokeColor = "none", LINEMouseMoveLineStrokeWidth = "none",
                     LINEMouseOutDisplay = FALSE, LINEMouseOutAnimationTime = 500,
                     LINEMouseOutLineOpacity = 1, LINEMouseOutLineStrokeColor = "none",
                     LINEMouseOutLineStrokeWidth = "none", LINEMouseUpDisplay = FALSE,
                     LINEMouseUpLineOpacity = 1, LINEMouseUpLineStrokeColor = "none",
                     LINEMouseUpLineStrokeWidth = "none", LINEMouseOverDisplay = FALSE,
                     LINEMouseOverLineOpacity = 1, LINEMouseOverLineStrokeColor = "none", LINEMouseOverLineStrokeWidth = "none",
                     LINEMouseOverTooltipsSetting = "style1", LINEMouseOverTooltipsHtml = " ",
                     LINEMouseOverTooltipsPosition = "absolute", LINEMouseOverTooltipsBackgroundColor = "white",
                     LINEMouseOverTooltipsBorderStyle = "solid", LINEMouseOverTooltipsBorderWidth = 0,
                     LINEMouseOverTooltipsPadding = "3px", LINEMouseOverTooltipsBorderRadius = "3px",
                     LINEMouseOverTooltipsOpacity = 1,
                     WIGMouseEvent = TRUE, WIGMouseClickDisplay = FALSE, WIGMouseClickLineOpacity = 1,
                     WIGMouseClickLineStrokeColor = "none", WIGMouseClickLineStrokeWidth = "none",
                     WIGMouseClickFillColor = "none", WIGMouseDownDisplay = FALSE,
                     WIGMouseDownLineOpacity = 1, WIGMouseDownLineStrokeColor = "none",
                     WIGMouseDownLineStrokeWidth = "none", WIGMouseDownFillColor = "none",
                     WIGMouseEnterDisplay = FALSE, WIGMouseEnterLineOpacity = 1,
                     WIGMouseEnterLineStrokeColor = "none", WIGMouseEnterLineStrokeWidth = "none",
                     WIGMouseEnterFillColor = "none", WIGMouseLeaveDisplay = FALSE,
                     WIGMouseLeaveLineOpacity = 1, WIGMouseLeaveLineStrokeColor = "none",
                     WIGMouseLeaveLineStrokeWidth = "none", WIGMouseLeaveFillColor = "none",
                     WIGMouseMoveDisplay = FALSE, WIGMouseMoveLineOpacity = 1,
                     WIGMouseMoveLineStrokeColor = "none", WIGMouseMoveLineStrokeWidth = "none",
                     WIGMouseMoveFillColor = "none", WIGMouseOutDisplay = FALSE,
                     WIGMouseOutAnimationTime = 500, WIGMouseOutLineOpacity = 1,
                     WIGMouseOutLineStrokeColor = "none", WIGMouseOutLineStrokeWidth = "none",
                     WIGMouseOutFillColor = "none", WIGMouseUpDisplay = FALSE, WIGMouseUpLineOpacity = 1,
                     WIGMouseUpLineStrokeColor = "none", WIGMouseUpLineStrokeWidth = "none",
                     WIGMouseUpFillColor = "none", WIGMouseOverDisplay = FALSE, WIGMouseOverLineOpacity = 1,
                     WIGMouseOverLineStrokeColor = "none", WIGMouseOverLineStrokeWidth = "none",
                     WIGMouseOverFillColor = "none", WIGMouseOverTooltipsSetting = "style1",
                     WIGMouseOverTooltipsHtml = " ", WIGMouseOverTooltipsPosition = "absolute",
                     WIGMouseOverTooltipsBackgroundColor = "white", WIGMouseOverTooltipsBorderStyle = "solid",
                     WIGMouseOverTooltipsBorderWidth = 0, WIGMouseOverTooltipsPadding = "3px",
                     WIGMouseOverTooltipsBorderRadius = "3px", WIGMouseOverTooltipsOpacity = 1,
                     SCATTERxlink = FALSE, SCATTERMouseEvent = TRUE,SCATTERMouseClickDisplay = FALSE,
                     SCATTERMouseClickColor = "red", SCATTERMouseClickCircleSize = 2,
                     SCATTERMouseClickCircleOpacity = 1, SCATTERMouseClickCircleStrokeColor = "none",
                     SCATTERMouseClickCircleStrokeWidth = "none", SCATTERMouseClickTextFromData = "fourth",
                     SCATTERMouseClickTextOpacity = 1, SCATTERMouseClickTextColor = "red",
                     SCATTERMouseClickTextSize = 8, SCATTERMouseClickTextPostionX = 1,
                     SCATTERMouseClickTextPostionY = 10, SCATTERMouseClickTextDrag = TRUE,
                     SCATTERMouseDownDisplay = FALSE, SCATTERMouseDownColor = "red", SCATTERMouseDownCircleSize = 2,
                     SCATTERMouseDownCircleOpacity = 1, SCATTERMouseDownCircleStrokeColor = "none",
                     SCATTERMouseDownCircleStrokeWidth = "none", SCATTERMouseEnterDisplay = FALSE,
                     SCATTERMouseEnterColor = "red", SCATTERMouseEnterCircleSize = 2,
                     SCATTERMouseEnterCircleOpacity = 1, SCATTERMouseEnterCircleStrokeColor = "none",
                     SCATTERMouseEnterCircleStrokeWidth = "none", SCATTERMouseLeaveDisplay = FALSE,
                     SCATTERMouseLeaveColor = "red", SCATTERMouseLeaveCircleSize = 2,
                     SCATTERMouseLeaveCircleOpacity = 1, SCATTERMouseLeaveCircleStrokeColor = "none",
                     SCATTERMouseLeaveCircleStrokeWidth = "none", SCATTERMouseMoveDisplay = FALSE,
                     SCATTERMouseMoveColor = "red", SCATTERMouseMoveCircleSize = 2,
                     SCATTERMouseMoveCircleOpacity = 1, SCATTERMouseMoveCircleStrokeColor = "none",
                     SCATTERMouseMoveCircleStrokeWidth = "none", SCATTERMouseOutDisplay = FALSE,
                     SCATTERMouseOutAnimationTime = 500, SCATTERMouseOutColor = "red",
                     SCATTERMouseOutCircleSize = 2, SCATTERMouseOutCircleOpacity = 1,
                     SCATTERMouseOutCircleStrokeColor = "none", SCATTERMouseOutCircleStrokeWidth = "none",
                     SCATTERMouseUpDisplay = FALSE, SCATTERMouseUpColor = "red",
                     SCATTERMouseUpCircleSize = 2, SCATTERMouseUpCircleOpacity = 1,
                     SCATTERMouseUpCircleStrokeColor = "none", SCATTERMouseUpCircleStrokeWidth = "none",
                     SCATTERMouseOverDisplay = FALSE, SCATTERMouseOverColor = "red",
                     SCATTERMouseOverCircleSize = 2, SCATTERMouseOverCircleOpacity = 1,
                     SCATTERMouseOverCircleStrokeColor = "none", SCATTERMouseOverCircleStrokeWidth = "none",
                     SCATTERMouseOverTooltipsSetting = "style1", SCATTERMouseOverTooltipsHtml = " ",
                     SCATTERMouseOverTooltipsPosition = "absolute", SCATTERMouseOverTooltipsBackgroundColor = "white",
                     SCATTERMouseOverTooltipsBorderStyle = "solid", SCATTERMouseOverTooltipsBorderWidth = 0,
                     SCATTERMouseOverTooltipsPadding = "3px", SCATTERMouseOverTooltipsBorderRadius = "3px",
                     SCATTERMouseOverTooltipsOpacity = 1,
                     ARCxlink = FALSE, ARCMouseEvent = TRUE, ARCMouseClickDisplay = FALSE,
                     ARCMouseClickColor = "red", ARCMouseClickArcOpacity = 1, ARCMouseClickArcStrokeColor = "none",
                     ARCMouseClickArcStrokeWidth = "none", ARCMouseClickTextFromData = "fourth",
                     ARCMouseClickTextOpacity = 1, ARCMouseClickTextColor = "red", ARCMouseClickTextSize = 8,
                     ARCMouseClickTextPostionX = 1, ARCMouseClickTextPostionY = 10, ARCMouseClickTextDrag = TRUE,
                     ARCMouseDownDisplay = FALSE, ARCMouseDownColor = "red", ARCMouseDownArcOpacity = 1,
                     ARCMouseDownArcStrokeColor = "none", ARCMouseDownArcStrokeWidth = "none",
                     ARCMouseEnterDisplay = FALSE, ARCMouseEnterColor = "red", ARCMouseEnterArcOpacity = 1,
                     ARCMouseEnterArcStrokeColor = "none", ARCMouseEnterArcStrokeWidth = "none",
                     ARCMouseLeaveDisplay = FALSE, ARCMouseLeaveColor = "red", ARCMouseLeaveArcOpacity = 1,
                     ARCMouseLeaveArcStrokeColor = "none", ARCMouseLeaveArcStrokeWidth = "none",
                     ARCMouseMoveDisplay = FALSE, ARCMouseMoveColor = "red", ARCMouseMoveArcOpacity = 1,
                     ARCMouseMoveArcStrokeColor = "none", ARCMouseMoveArcStrokeWidth = "none",
                     ARCMouseOutDisplay = FALSE, ARCMouseOutAnimationTime = 500, ARCMouseOutColor = "red",
                     ARCMouseOutArcOpacity = 1, ARCMouseOutArcStrokeColor = "none",
                     ARCMouseOutArcStrokeWidth = "none", ARCMouseUpDisplay = FALSE,
                     ARCMouseUpColor = "red", ARCMouseUpArcOpacity = 1, ARCMouseUpArcStrokeColor = "none",
                     ARCMouseUpArcStrokeWidth = "none", ARCMouseOverDisplay = FALSE,
                     ARCMouseOverColor = "red", ARCMouseOverArcOpacity = 1, ARCMouseOverArcStrokeColor = "none",
                     ARCMouseOverArcStrokeWidth = "none", ARCMouseOverTooltipsSetting = "style1",
                     ARCMouseOverTooltipsHtml = " ", ARCMouseOverTooltipsPosition = "absolute",
                     ARCMouseOverTooltipsBackgroundColor = "white", ARCMouseOverTooltipsBorderStyle = "solid",
                     ARCMouseOverTooltipsBorderWidth = 0, ARCMouseOverTooltipsPadding = "3px",
                     ARCMouseOverTooltipsBorderRadius = "3px", ARCMouseOverTooltipsOpacity = 1,
                     GENExlink = FALSE, GENEMouseEvent = TRUE, GENEMouseClickDisplay = FALSE,
                     GENEMouseClickColor = "red", GENEMouseClickArcOpacity = 1,
                     GENEMouseClickArcStrokeColor = "none", GENEMouseClickArcStrokeWidth = "none",
                     GENEMouseClickTextFromData = "fourth", GENEMouseClickTextOpacity = 1,
                     GENEMouseClickTextColor = "red", GENEMouseClickTextSize = 8,
                     GENEMouseClickTextPostionX = 1, GENEMouseClickTextPostionY = 10,
                     GENEMouseClickTextDrag = TRUE, GENEMouseDownDisplay = FALSE,
                     GENEMouseDownColor = "red", GENEMouseDownArcOpacity = 1,
                     GENEMouseDownArcStrokeColor = "none", GENEMouseDownArcStrokeWidth = "none",
                     GENEMouseEnterDisplay = FALSE, GENEMouseEnterColor = "red",
                     GENEMouseEnterArcOpacity = 1, GENEMouseEnterArcStrokeColor = "none",
                     GENEMouseEnterArcStrokeWidth = "none", GENEMouseLeaveDisplay = FALSE,
                     GENEMouseLeaveColor = "red", GENEMouseLeaveArcOpacity = 1,
                     GENEMouseLeaveArcStrokeColor = "none", GENEMouseLeaveArcStrokeWidth = "none",
                     GENEMouseMoveDisplay = FALSE, GENEMouseMoveColor = "red",
                     GENEMouseMoveArcOpacity = 1, GENEMouseMoveArcStrokeColor = "none",
                     GENEMouseMoveArcStrokeWidth = "none", GENEMouseOutDisplay = FALSE,
                     GENEMouseOutAnimationTime = 500, GENEMouseOutColor = "red",
                     GENEMouseOutArcOpacity = 1, GENEMouseOutArcStrokeColor = "none",
                     GENEMouseOutArcStrokeWidth = "none", GENEMouseUpDisplay = FALSE,
                     GENEMouseUpColor = "red", GENEMouseUpArcOpacity = 1,
                     GENEMouseUpArcStrokeColor = "none", GENEMouseUpArcStrokeWidth = "none",
                     GENEMouseOverDisplay = FALSE, GENEMouseOverColor = "red",
                     GENEMouseOverArcOpacity = 1, GENEMouseOverArcStrokeColor = "none",
                     GENEMouseOverArcStrokeWidth = "none", GENEMouseOverTooltipsSetting = "style1",
                     GENEMouseOverTooltipsHtml = " ", GENEMouseOverTooltipsPosition = "absolute",
                     GENEMouseOverTooltipsBackgroundColor = "white", GENEMouseOverTooltipsBorderStyle = "solid",
                     GENEMouseOverTooltipsBorderWidth = 0, GENEMouseOverTooltipsPadding = "3px",
                     GENEMouseOverTooltipsBorderRadius = "3px", GENEMouseOverTooltipsOpacity = 1,
                     LOLLIPOPxlink = FALSE, LOLLIPOPMouseEvent = TRUE, LOLLIPOPMouseClickDisplay = FALSE,
                     LOLLIPOPMouseClickColor = "red", LOLLIPOPMouseClickCircleSize = 2,
                     LOLLIPOPMouseClickCircleOpacity = 1, LOLLIPOPMouseClickCircleStrokeColor = "none",
                     LOLLIPOPMouseClickCircleStrokeWidth = "none", LOLLIPOPMouseClickTextFromData = "fourth",
                     LOLLIPOPMouseClickTextOpacity = 1, LOLLIPOPMouseClickTextColor = "red",
                     LOLLIPOPMouseClickTextSize = 8, LOLLIPOPMouseClickTextPostionX = 1,
                     LOLLIPOPMouseClickTextPostionY = 10, LOLLIPOPMouseClickTextDrag = TRUE,
                     LOLLIPOPMouseDownDisplay = FALSE, LOLLIPOPMouseDownColor = "red",
                     LOLLIPOPMouseDownCircleSize = 2, LOLLIPOPMouseDownCircleOpacity = 1,
                     LOLLIPOPMouseDownCircleStrokeColor = "none", LOLLIPOPMouseDownCircleStrokeWidth = "none",
                     LOLLIPOPMouseEnterDisplay = FALSE, LOLLIPOPMouseEnterColor = "red",
                     LOLLIPOPMouseEnterCircleSize = 2, LOLLIPOPMouseEnterCircleOpacity = 1,
                     LOLLIPOPMouseEnterCircleStrokeColor = "none", LOLLIPOPMouseEnterCircleStrokeWidth = "none",
                     LOLLIPOPMouseLeaveDisplay = FALSE, LOLLIPOPMouseLeaveColor = "red",
                     LOLLIPOPMouseLeaveCircleSize = 2, LOLLIPOPMouseLeaveCircleOpacity = 1,
                     LOLLIPOPMouseLeaveCircleStrokeColor = "none", LOLLIPOPMouseLeaveCircleStrokeWidth = "none",
                     LOLLIPOPMouseMoveDisplay = FALSE, LOLLIPOPMouseMoveColor = "red",
                     LOLLIPOPMouseMoveCircleSize = 2, LOLLIPOPMouseMoveCircleOpacity = 1,
                     LOLLIPOPMouseMoveCircleStrokeColor = "none", LOLLIPOPMouseMoveCircleStrokeWidth = "none",
                     LOLLIPOPMouseOutDisplay = FALSE, LOLLIPOPMouseOutAnimationTime = 500,
                     LOLLIPOPMouseOutColor = "red", LOLLIPOPMouseOutCircleSize = 2,
                     LOLLIPOPMouseOutCircleOpacity = 1, LOLLIPOPMouseOutCircleStrokeColor = "none",
                     LOLLIPOPMouseOutCircleStrokeWidth = "none", LOLLIPOPMouseUpDisplay = FALSE,
                     LOLLIPOPMouseUpColor = "red", LOLLIPOPMouseUpCircleSize = 2,
                     LOLLIPOPMouseUpCircleOpacity = 1, LOLLIPOPMouseUpCircleStrokeColor = "none",
                     LOLLIPOPMouseUpCircleStrokeWidth = "none", LOLLIPOPMouseOverDisplay = FALSE,
                     LOLLIPOPMouseOverColor = "red", LOLLIPOPMouseOverCircleSize = 2,
                     LOLLIPOPMouseOverCircleOpacity = 1, LOLLIPOPMouseOverCircleStrokeColor = "none",
                     LOLLIPOPMouseOverCircleStrokeWidth = "none", LOLLIPOPMouseOverTooltipsSetting = "style1",
                     LOLLIPOPMouseOverTooltipsHtml = " ", LOLLIPOPMouseOverTooltipsPosition = "absolute",
                     LOLLIPOPMouseOverTooltipsBackgroundColor = "white", LOLLIPOPMouseOverTooltipsBorderStyle = "solid",
                     LOLLIPOPMouseOverTooltipsBorderWidth = 0, LOLLIPOPMouseOverTooltipsPadding = "3px",
                     LOLLIPOPMouseOverTooltipsBorderRadius = "3px", LOLLIPOPMouseOverTooltipsOpacity = 1,
                      elementId = NULL, ...) {

  # If genome is a string, convert to corresponding chromosome lengths
  if(class(genome) == "character"){
    if(genome == "hg19"){
      genome = list("1" = 249250621,
                    "2" = 243199373,
                    "3" = 198022430,
                    "4" = 191154276,
                    "5" = 180915260,
                    "6" = 171115067,
                    "7" = 159138663,
                    "8" = 146364022,
                    "9" = 141213431,
                    "10" = 135534747,
                    "11" = 135006516,
                    "12" = 133851895,
                    "13" = 115169878,
                    "14" = 107349540,
                    "15" = 102531392,
                    "16" = 90354753,
                    "17" = 81195210,
                    "18" = 78077248,
                    "19" = 59128983,
                    "20" = 63025520,
                    "21" = 48129895,
                    "22" = 51304566,
                    "X" = 155270560,
                    "Y" = 59373566)
    }
    else{
      stop("\'genome\' parameter should be either a list of chromosome lengths or \'hg19\'.")
    }
  }

  if(class(genome2) == "character"){
    if(genome2 == "hg19"){
      genome2 = list("1" = 249250621,
                    "2" = 243199373,
                    "3" = 198022430,
                    "4" = 191154276,
                    "5" = 180915260,
                    "6" = 171115067,
                    "7" = 159138663,
                    "8" = 146364022,
                    "9" = 141213431,
                    "10" = 135534747,
                    "11" = 135006516,
                    "12" = 133851895,
                    "13" = 115169878,
                    "14" = 107349540,
                    "15" = 102531392,
                    "16" = 90354753,
                    "17" = 81195210,
                    "18" = 78077248,
                    "19" = 59128983,
                    "20" = 63025520,
                    "21" = 48129895,
                    "22" = 51304566,
                    "X" = 155270560,
                    "Y" = 59373566)
    }
    else{
      stop("\'genome\' parameter should be either a list of chromosome lengths or \'hg19\'.")
    }
  }

  # If genomeFillColor is a palette, create corresponding color vector
  genomeFillColor = .CircosColorCheck(genomeFillColor, length(genome), "genomeFillColor")
  
  # Extract module of circosJS
  moduleList_circosJS<-moduleList[which(grepl("CHORD.p",moduleList))]
  moduleList_NGCircos<-moduleList[which(!grepl("CHORD.p",moduleList))]
  
  # forward options using x
  x = list(
    message = message,
    moduleList_NGCircos = moduleList_NGCircos,
    moduleList_circosJS = moduleList_circosJS,
    genome = genome,
    genome2 = genome2,
    svgClassName = svgClassName,
    genomeFillColor = genomeFillColor,
    chrPad = chrPad,
    innerRadius = innerRadius,
    outerRadius = outerRadius,
    displayGenomeBorder = displayGenomeBorder,
    genomeBorderColor = genomeBorderColor,
    genomeBorderSize = genomeBorderSize,
    genomeTicksDisplay = genomeTicksDisplay,
    genomeTicksLen = genomeTicksLen,
    genomeTicksColor = genomeTicksColor,
    genomeTicksTextSize = genomeTicksTextSize,
    genomeTicksTextColor = genomeTicksTextColor,
    genomeTicksScale = genomeTicksScale,
    genomeTicksRealLength = genomeTicksRealLength,
    genomeTicksOffset = genomeTicksOffset,
    genomeLabelDisplay = genomeLabelDisplay,
    genomeLabelTextSize = genomeLabelTextSize,
    genomeLabelTextColor = genomeLabelTextColor,
    genomeLabelDx = genomeLabelDx,
    genomeLabelDy = genomeLabelDy,
    compareEvent=compareEvent,
    compareEventGroupGapRate=compareEventGroupGapRate,
    compareEventGroupDistance=compareEventGroupDistance,
    zoom = zoom,
    CNVxlink = CNVxlink,
    CNVMouseEvent = CNVMouseEvent,
    CNVMouseClickDisplay = CNVMouseClickDisplay,
    CNVMouseClickColor = CNVMouseClickColor,
    CNVMouseClickArcOpacity = CNVMouseClickArcOpacity,
    CNVMouseClickArcStrokeColor = CNVMouseClickArcStrokeColor,
    CNVMouseClickArcStrokeWidth = CNVMouseClickArcStrokeWidth,
    CNVMouseClickTextFromData = CNVMouseClickTextFromData,
    CNVMouseClickTextOpacity = CNVMouseClickTextOpacity,
    CNVMouseClickTextColor = CNVMouseClickTextColor,
    CNVMouseClickTextSize = CNVMouseClickTextSize,
    CNVMouseClickTextPostionX = CNVMouseClickTextPostionX,
    CNVMouseClickTextPostionY = CNVMouseClickTextPostionY,
    CNVMouseClickTextDrag = CNVMouseClickTextDrag,
    CNVMouseDownDisplay = CNVMouseDownDisplay,
    CNVMouseDownColor = CNVMouseDownColor,
    CNVMouseDownArcOpacity = CNVMouseDownArcOpacity,
    CNVMouseDownArcStrokeColor = CNVMouseDownArcStrokeColor,
    CNVMouseDownArcStrokeWidth = CNVMouseDownArcStrokeWidth,
    CNVMouseEnterDisplay = CNVMouseEnterDisplay,
    CNVMouseEnterColor = CNVMouseEnterColor,
    CNVMouseEnterArcOpacity = CNVMouseEnterArcOpacity,
    CNVMouseEnterArcStrokeColor = CNVMouseEnterArcStrokeColor,
    CNVMouseEnterArcStrokeWidth = CNVMouseEnterArcStrokeWidth,
    CNVMouseLeaveDisplay = CNVMouseLeaveDisplay,
    CNVMouseLeaveColor = CNVMouseLeaveColor,
    CNVMouseLeaveArcOpacity = CNVMouseLeaveArcOpacity,
    CNVMouseLeaveArcStrokeColor = CNVMouseLeaveArcStrokeColor,
    CNVMouseLeaveArcStrokeWidth = CNVMouseLeaveArcStrokeWidth,
    CNVMouseMoveDisplay = CNVMouseMoveDisplay,
    CNVMouseMoveColor = CNVMouseMoveColor,
    CNVMouseMoveArcOpacity = CNVMouseMoveArcOpacity,
    CNVMouseMoveArcStrokeColor = CNVMouseMoveArcStrokeColor,
    CNVMouseMoveArcStrokeWidth = CNVMouseMoveArcStrokeWidth,
    CNVMouseOutDisplay = CNVMouseOutDisplay,
    CNVMouseOutAnimationTime = CNVMouseOutAnimationTime,
    CNVMouseOutColor = CNVMouseOutColor,
    CNVMouseOutArcOpacity =CNVMouseOutArcOpacity,
    CNVMouseOutArcStrokeColor = CNVMouseOutArcStrokeColor,
    CNVMouseOutArcStrokeWidth = CNVMouseOutArcStrokeWidth,
    CNVMouseUpDisplay = CNVMouseUpDisplay,
    CNVMouseUpColor = CNVMouseUpColor,
    CNVMouseUpArcOpacity = CNVMouseUpArcOpacity,
    CNVMouseUpArcStrokeColor = CNVMouseUpArcStrokeColor,
    CNVMouseUpArcStrokeWidth = CNVMouseUpArcStrokeWidth,
    CNVMouseOverDisplay = CNVMouseOverDisplay,
    CNVMouseOverColor = CNVMouseOverColor,
    CNVMouseOverArcOpacity = CNVMouseOverArcOpacity,
    CNVMouseOverArcStrokeColor = CNVMouseOverArcStrokeColor,
    CNVMouseOverArcStrokeWidth = CNVMouseOverArcStrokeWidth,
    CNVMouseOverTooltipsSetting = CNVMouseOverTooltipsSetting,
    CNVMouseOverTooltipsHtml = CNVMouseOverTooltipsHtml,
    CNVMouseOverTooltipsPosition = CNVMouseOverTooltipsPosition,
    CNVMouseOverTooltipsBackgroundColor = CNVMouseOverTooltipsBackgroundColor,
    CNVMouseOverTooltipsBorderStyle = CNVMouseOverTooltipsBorderStyle,
    CNVMouseOverTooltipsBorderWidth = CNVMouseOverTooltipsBorderWidth,
    CNVMouseOverTooltipsPadding = CNVMouseOverTooltipsPadding,
    CNVMouseOverTooltipsBorderRadius = CNVMouseOverTooltipsBorderRadius,
    CNVMouseOverTooltipsOpacity = CNVMouseOverTooltipsOpacity,
    HEATMAPMouseEvent = HEATMAPMouseEvent,
    HEATMAPMouseClickDisplay = HEATMAPMouseClickDisplay,
    HEATMAPMouseClickColor = HEATMAPMouseClickColor,
    HEATMAPMouseClickOpacity = HEATMAPMouseClickOpacity,
    HEATMAPMouseClickStrokeColor = HEATMAPMouseClickStrokeColor,
    HEATMAPMouseClickStrokeWidth = HEATMAPMouseClickStrokeWidth,
    HEATMAPMouseDownDisplay = HEATMAPMouseDownDisplay,
    HEATMAPMouseDownColor = HEATMAPMouseDownColor,
    HEATMAPMouseDownOpacity = HEATMAPMouseDownOpacity,
    HEATMAPMouseDownStrokeColor = HEATMAPMouseDownStrokeColor,
    HEATMAPMouseDownStrokeWidth = HEATMAPMouseDownStrokeWidth,
    HEATMAPMouseEnterDisplay = HEATMAPMouseEnterDisplay,
    HEATMAPMouseEnterColor = HEATMAPMouseEnterColor,
    HEATMAPMouseEnterOpacity = HEATMAPMouseEnterOpacity,
    HEATMAPMouseEnterStrokeColor = HEATMAPMouseEnterStrokeColor,
    HEATMAPMouseEnterStrokeWidth = HEATMAPMouseEnterStrokeWidth,
    HEATMAPMouseLeaveDisplay = HEATMAPMouseLeaveDisplay,
    HEATMAPMouseLeaveColor = HEATMAPMouseLeaveColor,
    HEATMAPMouseLeaveOpacity = HEATMAPMouseLeaveOpacity,
    HEATMAPMouseLeaveStrokeColor = HEATMAPMouseLeaveStrokeColor,
    HEATMAPMouseLeaveStrokeWidth = HEATMAPMouseLeaveStrokeWidth,
    HEATMAPMouseMoveDisplay = HEATMAPMouseMoveDisplay,
    HEATMAPMouseMoveColor = HEATMAPMouseMoveColor,
    HEATMAPMouseMoveOpacity = HEATMAPMouseMoveOpacity,
    HEATMAPMouseMoveStrokeColor = HEATMAPMouseMoveStrokeColor,
    HEATMAPMouseMoveStrokeWidth = HEATMAPMouseMoveStrokeWidth,
    HEATMAPMouseOutDisplay = HEATMAPMouseOutDisplay,
    HEATMAPMouseOutAnimationTime = HEATMAPMouseOutAnimationTime,
    HEATMAPMouseOutColor = HEATMAPMouseOutColor,
    HEATMAPMouseOutOpacity = HEATMAPMouseOutOpacity,
    HEATMAPMouseOutStrokeColor = HEATMAPMouseOutStrokeColor,
    HEATMAPMouseOutStrokeWidth = HEATMAPMouseOutStrokeWidth,
    HEATMAPMouseUpDisplay = HEATMAPMouseUpDisplay,
    HEATMAPMouseUpColor = HEATMAPMouseUpColor,
    HEATMAPMouseUpOpacity = HEATMAPMouseUpOpacity,
    HEATMAPMouseUpStrokeColor = HEATMAPMouseUpStrokeColor,
    HEATMAPMouseUpStrokeWidth = HEATMAPMouseUpStrokeWidth,
    HEATMAPMouseOverDisplay = HEATMAPMouseOverDisplay,
    HEATMAPMouseOverColor = HEATMAPMouseOverColor,
    HEATMAPMouseOverOpacity = HEATMAPMouseOverOpacity,
    HEATMAPMouseOverStrokeColor = HEATMAPMouseOverStrokeColor,
    HEATMAPMouseOverStrokeWidth = HEATMAPMouseOverStrokeWidth,
    HEATMAPMouseOverTooltipsSetting = HEATMAPMouseOverTooltipsSetting,
    HEATMAPMouseOverTooltipsHtml = HEATMAPMouseOverTooltipsHtml,
    HEATMAPMouseOverTooltipsPosition = HEATMAPMouseOverTooltipsPosition,
    HEATMAPMouseOverTooltipsBackgroundColor = HEATMAPMouseOverTooltipsBackgroundColor,
    HEATMAPMouseOverTooltipsBorderStyle = HEATMAPMouseOverTooltipsBorderStyle,
    HEATMAPMouseOverTooltipsBorderWidth = HEATMAPMouseOverTooltipsBorderWidth,
    HEATMAPMouseOverTooltipsPadding = HEATMAPMouseOverTooltipsPadding,
    HEATMAPMouseOverTooltipsBorderRadius = HEATMAPMouseOverTooltipsBorderRadius,
    HEATMAPMouseOverTooltipsOpacity = HEATMAPMouseOverTooltipsOpacity,
    BUBBLExlink = BUBBLExlink,
    BUBBLEMouseEvent = BUBBLEMouseEvent,
    BUBBLEMouseClickDisplay = BUBBLEMouseClickDisplay,
    BUBBLEMouseClickColor = BUBBLEMouseClickColor,
    BUBBLEMouseClickOpacity = BUBBLEMouseClickOpacity,
    BUBBLEMouseClickStrokeColor = BUBBLEMouseClickStrokeColor,
    BUBBLEMouseClickStrokeWidth = BUBBLEMouseClickStrokeWidth,
    BUBBLEMouseDownDisplay = BUBBLEMouseDownDisplay,
    BUBBLEMouseDownColor = BUBBLEMouseDownColor,
    BUBBLEMouseDownOpacity = BUBBLEMouseDownOpacity,
    BUBBLEMouseDownStrokeColor = BUBBLEMouseDownStrokeColor,
    BUBBLEMouseDownStrokeWidth = BUBBLEMouseDownStrokeWidth,
    BUBBLEMouseEnterDisplay = BUBBLEMouseEnterDisplay,
    BUBBLEMouseEnterColor = BUBBLEMouseEnterColor,
    BUBBLEMouseEnterOpacity = BUBBLEMouseEnterOpacity,
    BUBBLEMouseEnterStrokeColor = BUBBLEMouseEnterStrokeColor,
    BUBBLEMouseEnterStrokeWidth = BUBBLEMouseEnterStrokeWidth,
    BUBBLEMouseLeaveDisplay = BUBBLEMouseLeaveDisplay,
    BUBBLEMouseLeaveColor = BUBBLEMouseLeaveColor,
    BUBBLEMouseLeaveOpacity = BUBBLEMouseLeaveOpacity,
    BUBBLEMouseLeaveStrokeColor = BUBBLEMouseLeaveStrokeColor,
    BUBBLEMouseLeaveStrokeWidth = BUBBLEMouseLeaveStrokeWidth,
    BUBBLEMouseMoveDisplay = BUBBLEMouseMoveDisplay,
    BUBBLEMouseMoveColor = BUBBLEMouseMoveColor,
    BUBBLEMouseMoveOpacity = BUBBLEMouseMoveOpacity,
    BUBBLEMouseMoveStrokeColor = BUBBLEMouseMoveStrokeColor,
    BUBBLEMouseMoveStrokeWidth = BUBBLEMouseMoveStrokeWidth,
    BUBBLEMouseOutDisplay = BUBBLEMouseOutDisplay,
    BUBBLEMouseOutAnimationTime = BUBBLEMouseOutAnimationTime,
    BUBBLEMouseOutColor = BUBBLEMouseOutColor,
    BUBBLEMouseOutOpacity = BUBBLEMouseOutOpacity,
    BUBBLEMouseOutStrokeColor = BUBBLEMouseOutStrokeColor,
    BUBBLEMouseOutStrokeWidth = BUBBLEMouseOutStrokeWidth,
    BUBBLEMouseUpDisplay = BUBBLEMouseUpDisplay,
    BUBBLEMouseUpColor = BUBBLEMouseUpColor,
    BUBBLEMouseUpOpacity = BUBBLEMouseUpOpacity,
    BUBBLEMouseUpStrokeColor = BUBBLEMouseUpStrokeColor,
    BUBBLEMouseUpStrokeWidth = BUBBLEMouseUpStrokeWidth,
    BUBBLEMouseOverDisplay = BUBBLEMouseOverDisplay,
    BUBBLEMouseOverColor = BUBBLEMouseOverColor,
    BUBBLEMouseOverOpacity = BUBBLEMouseOverOpacity,
    BUBBLEMouseOverStrokeColor = BUBBLEMouseOverStrokeColor,
    BUBBLEMouseOverStrokeWidth = BUBBLEMouseOverStrokeWidth,
    BUBBLEMouseOverTooltipsSetting = BUBBLEMouseOverTooltipsSetting,
    BUBBLEMouseOverTooltipsHtml = BUBBLEMouseOverTooltipsHtml,
    BUBBLEMouseOverTooltipsPosition = BUBBLEMouseOverTooltipsPosition,
    BUBBLEMouseOverTooltipsBackgroundColor = BUBBLEMouseOverTooltipsBackgroundColor,
    BUBBLEMouseOverTooltipsBorderStyle = BUBBLEMouseOverTooltipsBorderStyle,
    BUBBLEMouseOverTooltipsBorderWidth = BUBBLEMouseOverTooltipsBorderWidth,
    BUBBLEMouseOverTooltipsPadding = BUBBLEMouseOverTooltipsPadding,
    BUBBLEMouseOverTooltipsBorderRadius = BUBBLEMouseOverTooltipsBorderRadius,
    BUBBLEMouseOverTooltipsOpacity = BUBBLEMouseOverTooltipsOpacity,
    SNPxlink = SNPxlink,
    SNPMouseEvent = SNPMouseEvent,
    SNPMouseCombinationEvent = SNPMouseCombinationEvent,
    SNPMouseCombinationImageDisplay = SNPMouseCombinationImageDisplay,
    SNPMouseCombinationImageTitle = SNPMouseCombinationImageTitle,
    SNPMouseCombinationImageTitleSize = SNPMouseCombinationImageTitleSize,
    SNPMouseCombinationImageTitleWeight = SNPMouseCombinationImageTitleWeight,
    SNPMouseCombinationImageTitleColor = SNPMouseCombinationImageTitleColor,
    SNPMouseCombinationImagePositionX = SNPMouseCombinationImagePositionX,
    SNPMouseCombinationImagePositionY = SNPMouseCombinationImagePositionY,
    SNPMouseCombinationImageHeight = SNPMouseCombinationImageHeight,
    SNPMouseCombinationImageWidth = SNPMouseCombinationImageWidth,
    SNPMouseCombinationGraphDisplay = SNPMouseCombinationGraphDisplay,
    SNPMouseCombinationGraphTitle = SNPMouseCombinationGraphTitle,
    SNPMouseCombinationGraphTitleSize = SNPMouseCombinationGraphTitleSize,
    SNPMouseCombinationGraphTitleWeight = SNPMouseCombinationGraphTitleWeight,
    SNPMouseCombinationGraphTitleColor = SNPMouseCombinationGraphTitleColor,
    SNPMouseCombinationGraphType = SNPMouseCombinationGraphType,
    SNPMouseCombinationGraphPositionX = SNPMouseCombinationGraphPositionX,
    SNPMouseCombinationGraphPositionY = SNPMouseCombinationGraphPositionY,
    SNPMouseCombinationGraphHeight = SNPMouseCombinationGraphHeight,
    SNPMouseCombinationGraphWidth = SNPMouseCombinationGraphWidth,
    SNPMouseCombinationGraphHistogramBarColor = SNPMouseCombinationGraphHistogramBarColor,
    SNPMouseCombinationGraphHistogramPadding = SNPMouseCombinationGraphHistogramPadding,
    SNPMouseCombinationGraphHistogramPositionCorrectX = SNPMouseCombinationGraphHistogramPositionCorrectX,
    SNPMouseCombinationGraphPieAutoColor = SNPMouseCombinationGraphPieAutoColor,
    SNPMouseCombinationGraphPieColor = SNPMouseCombinationGraphPieColor,
    SNPMouseCombinationGraphPieSize = SNPMouseCombinationGraphPieSize,
    SNPMouseCombinationGraphPieStroke = SNPMouseCombinationGraphPieStroke,
    SNPMouseCombinationGraphPieStrokeColor = SNPMouseCombinationGraphPieStrokeColor,
    SNPMouseCombinationGraphPieStrokeWidth = SNPMouseCombinationGraphPieStrokeWidth,
    SNPMouseCombinationGraphPieOpacity = SNPMouseCombinationGraphPieOpacity,
    SNPMouseCombinationGraphLineType = SNPMouseCombinationGraphLineType,
    SNPMouseCombinationGraphLineColor = SNPMouseCombinationGraphLineColor,
    SNPMouseCombinationGraphLineWidth = SNPMouseCombinationGraphLineWidth,
    SNPMouseCombinationGraphLinePoint = SNPMouseCombinationGraphLinePoint,
    SNPMouseCombinationGraphLinePointSize = SNPMouseCombinationGraphLinePointSize,
    SNPMouseCombinationGraphLinePointAutoColor = SNPMouseCombinationGraphLinePointAutoColor,
    SNPMouseCombinationGraphLinePointColor = SNPMouseCombinationGraphLinePointColor,
    SNPMouseCombinationGraphLinePointStroke = SNPMouseCombinationGraphLinePointStroke,
    SNPMouseCombinationGraphLinePointStrokeColor = SNPMouseCombinationGraphLinePointStrokeColor,
    SNPMouseCombinationGraphLinePointStrokeWidth = SNPMouseCombinationGraphLinePointStrokeWidth,
    SNPMouseCombinationGraphLinePointOpacity = SNPMouseCombinationGraphLinePointOpacity,
    SNPMouseCombinationGraphLinePositionCorrectX = SNPMouseCombinationGraphLinePositionCorrectX,
    SNPMouseCombinationTextDisplay = SNPMouseCombinationTextDisplay,
    SNPMouseCombinationTextColor = SNPMouseCombinationTextColor,
    SNPMouseCombinationTextSize = SNPMouseCombinationTextSize,
    SNPMouseCombinationTextWeight = SNPMouseCombinationTextWeight,
    SNPMouseCombinationTextPositionCorrectX = SNPMouseCombinationTextPositionCorrectX,
    SNPMouseCombinationTextPositionCorrectY = SNPMouseCombinationTextPositionCorrectY,
    SNPMouseClickDisplay = SNPMouseClickDisplay,
    SNPMouseClickColor = SNPMouseClickColor,
    SNPMouseClickCircleSize = SNPMouseClickCircleSize,
    SNPMouseClickCircleOpacity = SNPMouseClickCircleOpacity,
    SNPMouseClickCircleStrokeColor = SNPMouseClickCircleStrokeColor,
    SNPMouseClickCircleStrokeWidth = SNPMouseClickCircleStrokeWidth,
    SNPMouseClickTextFromData = SNPMouseClickTextFromData,
    SNPMouseClickTextOpacity = SNPMouseClickTextOpacity,
    SNPMouseClickTextColor = SNPMouseClickTextColor,
    SNPMouseClickTextSize = SNPMouseClickTextSize,
    SNPMouseClickTextPostionX = SNPMouseClickTextPostionX,
    SNPMouseClickTextPostionY = SNPMouseClickTextPostionY,
    SNPMouseClickTextDrag = SNPMouseClickTextDrag,
    SNPMouseDownDisplay = SNPMouseDownDisplay,
    SNPMouseDownColor = SNPMouseDownColor,
    SNPMouseDownCircleSize = SNPMouseDownCircleSize,
    SNPMouseDownCircleOpacity = SNPMouseDownCircleOpacity,
    SNPMouseDownCircleStrokeColor = SNPMouseDownCircleStrokeColor,
    SNPMouseDownCircleStrokeWidth = SNPMouseDownCircleStrokeWidth,
    SNPMouseEnterDisplay = SNPMouseEnterDisplay,
    SNPMouseEnterColor = SNPMouseEnterColor,
    SNPMouseEnterCircleSize = SNPMouseEnterCircleSize,
    SNPMouseEnterCircleOpacity = SNPMouseEnterCircleOpacity,
    SNPMouseEnterCircleStrokeColor = SNPMouseEnterCircleStrokeColor,
    SNPMouseEnterCircleStrokeWidth = SNPMouseEnterCircleStrokeWidth,
    SNPMouseLeaveDisplay = SNPMouseLeaveDisplay,
    SNPMouseLeaveColor = SNPMouseLeaveColor,
    SNPMouseLeaveCircleSize = SNPMouseLeaveCircleSize,
    SNPMouseLeaveCircleOpacity = SNPMouseLeaveCircleOpacity,
    SNPMouseLeaveCircleStrokeColor = SNPMouseLeaveCircleStrokeColor,
    SNPMouseLeaveCircleStrokeWidth = SNPMouseLeaveCircleStrokeWidth,
    SNPMouseMoveDisplay = SNPMouseMoveDisplay,
    SNPMouseMoveColor = SNPMouseMoveColor,
    SNPMouseMoveCircleSize = SNPMouseMoveCircleSize,
    SNPMouseMoveCircleOpacity = SNPMouseMoveCircleOpacity,
    SNPMouseMoveCircleStrokeColor = SNPMouseMoveCircleStrokeColor,
    SNPMouseMoveCircleStrokeWidth = SNPMouseMoveCircleStrokeWidth,
    SNPMouseOutDisplay = SNPMouseOutDisplay,
    SNPMouseOutAnimationTime = SNPMouseOutAnimationTime,
    SNPMouseOutColor = SNPMouseOutColor,
    SNPMouseOutCircleSize = SNPMouseOutCircleSize,
    SNPMouseOutCircleOpacity = SNPMouseOutCircleOpacity,
    SNPMouseOutCircleStrokeColor = SNPMouseOutCircleStrokeColor,
    SNPMouseOutCircleStrokeWidth = SNPMouseOutCircleStrokeWidth,
    SNPMouseUpDisplay = SNPMouseUpDisplay,
    SNPMouseUpColor = SNPMouseUpColor,
    SNPMouseUpCircleSize = SNPMouseUpCircleSize,
    SNPMouseUpCircleOpacity = SNPMouseUpCircleOpacity,
    SNPMouseUpCircleStrokeColor = SNPMouseUpCircleStrokeColor,
    SNPMouseUpCircleStrokeWidth = SNPMouseUpCircleStrokeWidth,
    SNPMouseOverDisplay = SNPMouseOverDisplay,
    SNPMouseOverColor = SNPMouseOverColor,
    SNPMouseOverCircleSize = SNPMouseOverCircleSize,
    SNPMouseOverCircleOpacity = SNPMouseOverCircleOpacity,
    SNPMouseOverCircleStrokeColor = SNPMouseOverCircleStrokeColor,
    SNPMouseOverCircleStrokeWidth = SNPMouseOverCircleStrokeWidth,
    SNPMouseOverTooltipsSetting = SNPMouseOverTooltipsSetting,
    SNPMouseOverTooltipsHtml = SNPMouseOverTooltipsHtml,
    SNPMouseOverTooltipsPosition = SNPMouseOverTooltipsPosition,
    SNPMouseOverTooltipsBackgroundColor = SNPMouseOverTooltipsBackgroundColor,
    SNPMouseOverTooltipsBorderStyle = SNPMouseOverTooltipsBorderStyle,
    SNPMouseOverTooltipsBorderWidth = SNPMouseOverTooltipsBorderWidth,
    SNPMouseOverTooltipsPadding = SNPMouseOverTooltipsPadding,
    SNPMouseOverTooltipsBorderRadius = SNPMouseOverTooltipsBorderRadius,
    SNPMouseOverTooltipsOpacity = SNPMouseOverTooltipsOpacity,
    TEXTModuleDragEvent = TEXTModuleDragEvent,
    LINKxlink = LINKxlink,
    LINKMouseEvent = LINKMouseEvent,
    LINKMouseClickDisplay = LINKMouseClickDisplay,
    LINKMouseClickOpacity = LINKMouseClickOpacity,
    LINKMouseClickStrokeColor = LINKMouseClickStrokeColor,
    LINKMouseClickStrokeWidth = LINKMouseClickStrokeWidth,
    LINKMouseDownDisplay = LINKMouseDownDisplay,
    LINKMouseDownOpacity = LINKMouseDownOpacity,
    LINKMouseDownStrokeColor = LINKMouseDownStrokeColor,
    LINKMouseDownStrokeWidth = LINKMouseDownStrokeWidth,
    LINKMouseEnterDisplay = LINKMouseEnterDisplay,
    LINKMouseEnterOpacity = LINKMouseEnterOpacity,
    LINKMouseEnterStrokeColor = LINKMouseEnterStrokeColor,
    LINKMouseEnterStrokeWidth = LINKMouseEnterStrokeWidth,
    LINKMouseLeaveDisplay = LINKMouseLeaveDisplay,
    LINKMouseLeaveOpacity = LINKMouseLeaveOpacity,
    LINKMouseLeaveStrokeColor = LINKMouseLeaveStrokeColor,
    LINKMouseLeaveStrokeWidth = LINKMouseLeaveStrokeWidth,
    LINKMouseMoveDisplay = LINKMouseMoveDisplay,
    LINKMouseMoveOpacity = LINKMouseMoveOpacity,
    LINKMouseMoveStrokeColor = LINKMouseMoveStrokeColor,
    LINKMouseMoveStrokeWidth = LINKMouseMoveStrokeWidth,
    LINKMouseOutDisplay = LINKMouseOutDisplay,
    LINKMouseOutAnimationTime = LINKMouseOutAnimationTime,
    LINKMouseOutOpacity = LINKMouseOutOpacity,
    LINKMouseOutStrokeColor = LINKMouseOutStrokeColor,
    LINKMouseOutStrokeWidth = LINKMouseOutStrokeWidth,
    LINKMouseUpDisplay = LINKMouseUpDisplay,
    LINKMouseUpOpacity = LINKMouseUpOpacity,
    LINKMouseUpStrokeColor = LINKMouseUpStrokeColor,
    LINKMouseUpStrokeWidth = LINKMouseUpStrokeWidth,
    LINKMouseOverDisplay = LINKMouseOverDisplay,
    LINKMouseOverOpacity = LINKMouseOverOpacity,
    LINKMouseOverStrokeColor = LINKMouseOverStrokeColor,
    LINKMouseOverStrokeWidth = LINKMouseOverStrokeWidth,
    LINKMouseOverTooltipsSetting = LINKMouseOverTooltipsSetting,
    LINKMouseOverTooltipsHtml = LINKMouseOverTooltipsHtml,
    LINKMouseOverTooltipsPosition = LINKMouseOverTooltipsPosition,
    LINKMouseOverTooltipsBackgroundColor = LINKMouseOverTooltipsBackgroundColor,
    LINKMouseOverTooltipsBorderStyle = LINKMouseOverTooltipsBorderStyle,
    LINKMouseOverTooltipsBorderWidth = LINKMouseOverTooltipsBorderWidth,
    LINKMouseOverTooltipsPadding = LINKMouseOverTooltipsPadding,
    LINKMouseOverTooltipsBorderRadius = LINKMouseOverTooltipsBorderRadius,
    LINKMouseOverTooltipsOpacity = LINKMouseOverTooltipsOpacity,
    LINKLabelDragEvent = LINKLabelDragEvent,
    CHORDMouseEvent = CHORDMouseEvent,
    CHORDMouseFillColorExcluded = CHORDMouseFillColorExcluded,
    CHORDMouseClickDisplay = CHORDMouseClickDisplay,
    CHORDMouseClickOpacity = CHORDMouseClickOpacity,
    CHORDMouseClickStrokeColor = CHORDMouseClickStrokeColor,
    CHORDMouseClickStrokeWidth = CHORDMouseClickStrokeWidth,
    CHORDMouseDownDisplay = CHORDMouseDownDisplay,
    CHORDMouseDownOpacity = CHORDMouseDownOpacity,
    CHORDMouseDownStrokeColor = CHORDMouseDownStrokeColor,
    CHORDMouseDownStrokeWidth = CHORDMouseDownStrokeWidth,
    CHORDMouseEnterDisplay = CHORDMouseEnterDisplay,
    CHORDMouseEnterOpacity = CHORDMouseEnterOpacity,
    CHORDMouseEnterStrokeColor = CHORDMouseEnterStrokeColor,
    CHORDMouseEnterStrokeWidth = CHORDMouseEnterStrokeWidth,
    CHORDMouseLeaveDisplay = CHORDMouseLeaveDisplay,
    CHORDMouseLeaveOpacity = CHORDMouseLeaveOpacity,
    CHORDMouseLeaveStrokeColor = CHORDMouseLeaveStrokeColor,
    CHORDMouseLeaveStrokeWidth = CHORDMouseLeaveStrokeWidth,
    CHORDMouseMoveDisplay = CHORDMouseMoveDisplay,
    CHORDMouseMoveOpacity = CHORDMouseMoveOpacity,
    CHORDMouseMoveStrokeColor = CHORDMouseMoveStrokeColor,
    CHORDMouseMoveStrokeWidth = CHORDMouseMoveStrokeWidth,
    CHORDMouseOutDisplay = CHORDMouseOutDisplay,
    CHORDMouseOutAnimationTime = CHORDMouseOutAnimationTime,
    CHORDMouseOutOpacity = CHORDMouseOutOpacity,
    CHORDMouseOutStrokeColor = CHORDMouseOutStrokeColor,
    CHORDMouseOutStrokeWidth = CHORDMouseOutStrokeWidth,
    CHORDMouseUpDisplay = CHORDMouseUpDisplay,
    CHORDMouseUpOpacity = CHORDMouseUpOpacity,
    CHORDMouseUpStrokeColor = CHORDMouseUpStrokeColor,
    CHORDMouseUpStrokeWidth = CHORDMouseUpStrokeWidth,
    CHORDMouseOverDisplay = CHORDMouseOverDisplay,
    CHORDMouseOverOpacity = CHORDMouseOverOpacity,
    CHORDMouseOverStrokeColor = CHORDMouseOverStrokeColor,
    CHORDMouseOverStrokeWidth = CHORDMouseOverStrokeWidth,
    HISTOGRAMxlink = HISTOGRAMxlink,
    HISTOGRAMMouseEvent = HISTOGRAMMouseEvent,
    HISTOGRAMMouseClickDisplay = HISTOGRAMMouseClickDisplay,
    HISTOGRAMMouseClickColor = HISTOGRAMMouseClickColor,
    HISTOGRAMMouseClickOpacity = HISTOGRAMMouseClickOpacity,
    HISTOGRAMMouseClickStrokeColor = HISTOGRAMMouseClickStrokeColor,
    HISTOGRAMMouseClickStrokeWidth = HISTOGRAMMouseClickStrokeWidth,
    HISTOGRAMMouseDownDisplay = HISTOGRAMMouseDownDisplay,
    HISTOGRAMMouseDownColor = HISTOGRAMMouseDownColor,
    HISTOGRAMMouseDownOpacity = HISTOGRAMMouseDownOpacity,
    HISTOGRAMMouseDownStrokeColor = HISTOGRAMMouseDownStrokeColor,
    HISTOGRAMMouseDownStrokeWidth = HISTOGRAMMouseDownStrokeWidth,
    HISTOGRAMMouseEnterDisplay = HISTOGRAMMouseEnterDisplay,
    HISTOGRAMMouseEnterColor = HISTOGRAMMouseEnterColor,
    HISTOGRAMMouseEnterOpacity = HISTOGRAMMouseEnterOpacity,
    HISTOGRAMMouseEnterStrokeColor = HISTOGRAMMouseEnterStrokeColor,
    HISTOGRAMMouseEnterStrokeWidth = HISTOGRAMMouseEnterStrokeWidth,
    HISTOGRAMMouseLeaveDisplay = HISTOGRAMMouseLeaveDisplay,
    HISTOGRAMMouseLeaveColor = HISTOGRAMMouseLeaveColor,
    HISTOGRAMMouseLeaveOpacity = HISTOGRAMMouseLeaveOpacity,
    HISTOGRAMMouseLeaveStrokeColor = HISTOGRAMMouseLeaveStrokeColor,
    HISTOGRAMMouseLeaveStrokeWidth = HISTOGRAMMouseLeaveStrokeWidth,
    HISTOGRAMMouseMoveDisplay = HISTOGRAMMouseMoveDisplay,
    HISTOGRAMMouseMoveColor = HISTOGRAMMouseMoveColor,
    HISTOGRAMMouseMoveOpacity = HISTOGRAMMouseMoveOpacity,
    HISTOGRAMMouseMoveStrokeColor = HISTOGRAMMouseMoveStrokeColor,
    HISTOGRAMMouseMoveStrokeWidth = HISTOGRAMMouseMoveStrokeWidth,
    HISTOGRAMMouseOutDisplay = HISTOGRAMMouseOutDisplay,
    HISTOGRAMMouseOutAnimationTime = HISTOGRAMMouseOutAnimationTime,
    HISTOGRAMMouseOutColor = HISTOGRAMMouseOutColor,
    HISTOGRAMMouseOutOpacity = HISTOGRAMMouseOutOpacity,
    HISTOGRAMMouseOutStrokeColor = HISTOGRAMMouseOutStrokeColor,
    HISTOGRAMMouseOutStrokeWidth = HISTOGRAMMouseOutStrokeWidth,
    HISTOGRAMMouseUpDisplay = HISTOGRAMMouseUpDisplay,
    HISTOGRAMMouseUpColor = HISTOGRAMMouseUpColor,
    HISTOGRAMMouseUpOpacity = HISTOGRAMMouseUpOpacity,
    HISTOGRAMMouseUpStrokeColor = HISTOGRAMMouseUpStrokeColor,
    HISTOGRAMMouseUpStrokeWidth = HISTOGRAMMouseUpStrokeWidth,
    HISTOGRAMMouseOverDisplay = HISTOGRAMMouseOverDisplay,
    HISTOGRAMMouseOverColor = HISTOGRAMMouseOverColor,
    HISTOGRAMMouseOverOpacity = HISTOGRAMMouseOverOpacity,
    HISTOGRAMMouseOverStrokeColor = HISTOGRAMMouseOverStrokeColor,
    HISTOGRAMMouseOverStrokeWidth = HISTOGRAMMouseOverStrokeWidth,
    HISTOGRAMMouseOverTooltipsSetting = HISTOGRAMMouseOverTooltipsSetting,
    HISTOGRAMMouseOverTooltipsHtml = HISTOGRAMMouseOverTooltipsHtml,
    HISTOGRAMMouseOverTooltipsPosition = HISTOGRAMMouseOverTooltipsPosition,
    HISTOGRAMMouseOverTooltipsBackgroundColor = HISTOGRAMMouseOverTooltipsBackgroundColor,
    HISTOGRAMMouseOverTooltipsBorderStyle = HISTOGRAMMouseOverTooltipsBorderStyle,
    HISTOGRAMMouseOverTooltipsBorderWidth = HISTOGRAMMouseOverTooltipsBorderWidth,
    HISTOGRAMMouseOverTooltipsPadding = HISTOGRAMMouseOverTooltipsPadding,
    HISTOGRAMMouseOverTooltipsBorderRadius = HISTOGRAMMouseOverTooltipsBorderRadius,
    HISTOGRAMMouseOverTooltipsOpacity = HISTOGRAMMouseOverTooltipsOpacity,
    LINEMouseEvent = LINEMouseEvent,
    LINEMouseClickDisplay = LINEMouseClickDisplay,
    LINEMouseClickLineOpacity = LINEMouseClickLineOpacity,
    LINEMouseClickLineStrokeColor = LINEMouseClickLineStrokeColor,
    LINEMouseClickLineStrokeWidth = LINEMouseClickLineStrokeWidth,
    LINEMouseDownDisplay = LINEMouseDownDisplay,
    LINEMouseDownLineOpacity = LINEMouseDownLineOpacity,
    LINEMouseDownLineStrokeColor = LINEMouseDownLineStrokeColor,
    LINEMouseDownLineStrokeWidth = LINEMouseDownLineStrokeWidth,
    LINEMouseEnterDisplay = LINEMouseEnterDisplay,
    LINEMouseEnterLineOpacity = LINEMouseEnterLineOpacity,
    LINEMouseEnterLineStrokeColor = LINEMouseEnterLineStrokeColor,
    LINEMouseEnterLineStrokeWidth = LINEMouseEnterLineStrokeWidth,
    LINEMouseLeaveDisplay = LINEMouseLeaveDisplay,
    LINEMouseLeaveLineOpacity = LINEMouseLeaveLineOpacity,
    LINEMouseLeaveLineStrokeColor = LINEMouseLeaveLineStrokeColor,
    LINEMouseLeaveLineStrokeWidth = LINEMouseLeaveLineStrokeWidth,
    LINEMouseMoveDisplay = LINEMouseMoveDisplay,
    LINEMouseMoveLineOpacity = LINEMouseMoveLineOpacity,
    LINEMouseMoveLineStrokeColor = LINEMouseMoveLineStrokeColor,
    LINEMouseMoveLineStrokeWidth = LINEMouseMoveLineStrokeWidth,
    LINEMouseOutDisplay = LINEMouseOutDisplay,
    LINEMouseOutAnimationTime = LINEMouseOutAnimationTime,
    LINEMouseOutLineOpacity = LINEMouseOutLineOpacity,
    LINEMouseOutLineStrokeColor = LINEMouseOutLineStrokeColor,
    LINEMouseOutLineStrokeWidth = LINEMouseOutLineStrokeWidth,
    LINEMouseUpDisplay = LINEMouseUpDisplay,
    LINEMouseUpLineOpacity = LINEMouseUpLineOpacity,
    LINEMouseUpLineStrokeColor = LINEMouseUpLineStrokeColor,
    LINEMouseUpLineStrokeWidth = LINEMouseUpLineStrokeWidth,
    LINEMouseOverDisplay = LINEMouseOverDisplay,
    LINEMouseOverLineOpacity = LINEMouseOverLineOpacity,
    LINEMouseOverLineStrokeColor = LINEMouseOverLineStrokeColor,
    LINEMouseOverLineStrokeWidth = LINEMouseOverLineStrokeWidth,
    LINEMouseOverTooltipsSetting = LINEMouseOverTooltipsSetting,
    LINEMouseOverTooltipsHtml = LINEMouseOverTooltipsHtml,
    LINEMouseOverTooltipsPosition = LINEMouseOverTooltipsPosition,
    LINEMouseOverTooltipsBackgroundColor = LINEMouseOverTooltipsBackgroundColor,
    LINEMouseOverTooltipsBorderStyle = LINEMouseOverTooltipsBorderStyle,
    LINEMouseOverTooltipsBorderWidth = LINEMouseOverTooltipsBorderWidth,
    LINEMouseOverTooltipsPadding = LINEMouseOverTooltipsPadding,
    LINEMouseOverTooltipsBorderRadius = LINEMouseOverTooltipsBorderRadius,
    LINEMouseOverTooltipsOpacity = LINEMouseOverTooltipsOpacity,
    WIGMouseEvent = WIGMouseEvent,
    WIGMouseClickDisplay = WIGMouseClickDisplay,
    WIGMouseClickLineOpacity = WIGMouseClickLineOpacity,
    WIGMouseClickLineStrokeColor = WIGMouseClickLineStrokeColor,
    WIGMouseClickLineStrokeWidth = WIGMouseClickLineStrokeWidth,
    WIGMouseClickFillColor = WIGMouseClickFillColor,
    WIGMouseDownDisplay = WIGMouseDownDisplay,
    WIGMouseDownLineOpacity = WIGMouseDownLineOpacity,
    WIGMouseDownLineStrokeColor = WIGMouseDownLineStrokeColor,
    WIGMouseDownLineStrokeWidth = WIGMouseDownLineStrokeWidth,
    WIGMouseDownFillColor = WIGMouseDownFillColor,
    WIGMouseEnterDisplay = WIGMouseEnterDisplay,
    WIGMouseEnterLineOpacity = WIGMouseEnterLineOpacity,
    WIGMouseEnterLineStrokeColor = WIGMouseEnterLineStrokeColor,
    WIGMouseEnterLineStrokeWidth = WIGMouseEnterLineStrokeWidth,
    WIGMouseEnterFillColor = WIGMouseEnterFillColor,
    WIGMouseLeaveDisplay = WIGMouseLeaveDisplay,
    WIGMouseLeaveLineOpacity = WIGMouseLeaveLineOpacity,
    WIGMouseLeaveLineStrokeColor = WIGMouseLeaveLineStrokeColor,
    WIGMouseLeaveLineStrokeWidth = WIGMouseLeaveLineStrokeWidth,
    WIGMouseLeaveFillColor = WIGMouseLeaveFillColor,
    WIGMouseMoveDisplay = WIGMouseMoveDisplay,
    WIGMouseMoveLineOpacity = WIGMouseMoveLineOpacity,
    WIGMouseMoveLineStrokeColor = WIGMouseMoveLineStrokeColor,
    WIGMouseMoveLineStrokeWidth = WIGMouseMoveLineStrokeWidth,
    WIGMouseMoveFillColor = WIGMouseMoveFillColor,
    WIGMouseOutDisplay = WIGMouseOutDisplay,
    WIGMouseOutAnimationTime = WIGMouseOutAnimationTime,
    WIGMouseOutLineOpacity = WIGMouseOutLineOpacity,
    WIGMouseOutLineStrokeColor = WIGMouseOutLineStrokeColor,
    WIGMouseOutLineStrokeWidth = WIGMouseOutLineStrokeWidth,
    WIGMouseOutFillColor = WIGMouseOutFillColor,
    WIGMouseUpDisplay = WIGMouseUpDisplay,
    WIGMouseUpLineOpacity = WIGMouseUpLineOpacity,
    WIGMouseUpLineStrokeColor = WIGMouseUpLineStrokeColor,
    WIGMouseUpLineStrokeWidth = WIGMouseUpLineStrokeWidth,
    WIGMouseUpFillColor = WIGMouseUpFillColor,
    WIGMouseOverDisplay = WIGMouseOverDisplay,
    WIGMouseOverLineOpacity = WIGMouseOverLineOpacity,
    WIGMouseOverLineStrokeColor = WIGMouseOverLineStrokeColor,
    WIGMouseOverLineStrokeWidth = WIGMouseOverLineStrokeWidth,
    WIGMouseOverFillColor = WIGMouseOverFillColor,
    WIGMouseOverTooltipsSetting = WIGMouseOverTooltipsSetting,
    WIGMouseOverTooltipsHtml = WIGMouseOverTooltipsHtml,
    WIGMouseOverTooltipsPosition = WIGMouseOverTooltipsPosition,
    WIGMouseOverTooltipsBackgroundColor = WIGMouseOverTooltipsBackgroundColor,
    WIGMouseOverTooltipsBorderStyle = WIGMouseOverTooltipsBorderStyle,
    WIGMouseOverTooltipsBorderWidth = WIGMouseOverTooltipsBorderWidth,
    WIGMouseOverTooltipsPadding = WIGMouseOverTooltipsPadding,
    WIGMouseOverTooltipsBorderRadius = WIGMouseOverTooltipsBorderRadius,
    WIGMouseOverTooltipsOpacity = WIGMouseOverTooltipsOpacity,
    SCATTERxlink = SCATTERxlink,
    SCATTERMouseEvent = SCATTERMouseEvent,
    SCATTERMouseClickDisplay = SCATTERMouseClickDisplay,
    SCATTERMouseClickColor = SCATTERMouseClickColor,
    SCATTERMouseClickCircleSize = SCATTERMouseClickCircleSize,
    SCATTERMouseClickCircleOpacity = SCATTERMouseClickCircleOpacity,
    SCATTERMouseClickCircleStrokeColor = SCATTERMouseClickCircleStrokeColor,
    SCATTERMouseClickCircleStrokeWidth = SCATTERMouseClickCircleStrokeWidth,
    SCATTERMouseClickTextFromData = SCATTERMouseClickTextFromData,
    SCATTERMouseClickTextOpacity = SCATTERMouseClickTextOpacity,
    SCATTERMouseClickTextColor = SCATTERMouseClickTextColor,
    SCATTERMouseClickTextSize = SCATTERMouseClickTextSize,
    SCATTERMouseClickTextPostionX = SCATTERMouseClickTextPostionX,
    SCATTERMouseClickTextPostionY = SCATTERMouseClickTextPostionY,
    SCATTERMouseClickTextDrag = SCATTERMouseClickTextDrag,
    SCATTERMouseDownDisplay = SCATTERMouseDownDisplay,
    SCATTERMouseDownColor = SCATTERMouseDownColor,
    SCATTERMouseDownCircleSize = SCATTERMouseDownCircleSize,
    SCATTERMouseDownCircleOpacity = SCATTERMouseDownCircleOpacity,
    SCATTERMouseDownCircleStrokeColor = SCATTERMouseDownCircleStrokeColor,
    SCATTERMouseDownCircleStrokeWidth = SCATTERMouseDownCircleStrokeWidth,
    SCATTERMouseEnterDisplay = SCATTERMouseEnterDisplay,
    SCATTERMouseEnterColor = SCATTERMouseEnterColor,
    SCATTERMouseEnterCircleSize = SCATTERMouseEnterCircleSize,
    SCATTERMouseEnterCircleOpacity = SCATTERMouseEnterCircleOpacity,
    SCATTERMouseEnterCircleStrokeColor = SCATTERMouseEnterCircleStrokeColor,
    SCATTERMouseEnterCircleStrokeWidth = SCATTERMouseEnterCircleStrokeWidth,
    SCATTERMouseLeaveDisplay = SCATTERMouseLeaveDisplay,
    SCATTERMouseLeaveColor = SCATTERMouseLeaveColor,
    SCATTERMouseLeaveCircleSize = SCATTERMouseLeaveCircleSize,
    SCATTERMouseLeaveCircleOpacity = SCATTERMouseLeaveCircleOpacity,
    SCATTERMouseLeaveCircleStrokeColor = SCATTERMouseLeaveCircleStrokeColor,
    SCATTERMouseLeaveCircleStrokeWidth = SCATTERMouseLeaveCircleStrokeWidth,
    SCATTERMouseMoveDisplay = SCATTERMouseMoveDisplay,
    SCATTERMouseMoveColor = SCATTERMouseMoveColor,
    SCATTERMouseMoveCircleSize = SCATTERMouseMoveCircleSize,
    SCATTERMouseMoveCircleOpacity = SCATTERMouseMoveCircleOpacity,
    SCATTERMouseMoveCircleStrokeColor = SCATTERMouseMoveCircleStrokeColor,
    SCATTERMouseMoveCircleStrokeWidth = SCATTERMouseMoveCircleStrokeWidth,
    SCATTERMouseOutDisplay = SCATTERMouseOutDisplay,
    SCATTERMouseOutAnimationTime = SCATTERMouseOutAnimationTime,
    SCATTERMouseOutColor = SCATTERMouseOutColor,
    SCATTERMouseOutCircleSize = SCATTERMouseOutCircleSize,
    SCATTERMouseOutCircleOpacity = SCATTERMouseOutCircleOpacity,
    SCATTERMouseOutCircleStrokeColor = SCATTERMouseOutCircleStrokeColor,
    SCATTERMouseOutCircleStrokeWidth = SCATTERMouseOutCircleStrokeWidth,
    SCATTERMouseUpDisplay = SCATTERMouseUpDisplay,
    SCATTERMouseUpColor = SCATTERMouseUpColor,
    SCATTERMouseUpCircleSize = SCATTERMouseUpCircleSize,
    SCATTERMouseUpCircleOpacity = SCATTERMouseUpCircleOpacity,
    SCATTERMouseUpCircleStrokeColor = SCATTERMouseUpCircleStrokeColor,
    SCATTERMouseUpCircleStrokeWidth = SCATTERMouseUpCircleStrokeWidth,
    SCATTERMouseOverDisplay = SCATTERMouseOverDisplay,
    SCATTERMouseOverColor = SCATTERMouseOverColor,
    SCATTERMouseOverCircleSize = SCATTERMouseOverCircleSize,
    SCATTERMouseOverCircleOpacity = SCATTERMouseOverCircleOpacity,
    SCATTERMouseOverCircleStrokeColor = SCATTERMouseOverCircleStrokeColor,
    SCATTERMouseOverCircleStrokeWidth = SCATTERMouseOverCircleStrokeWidth,
    SCATTERMouseOverTooltipsSetting = SCATTERMouseOverTooltipsSetting,
    SCATTERMouseOverTooltipsHtml = SCATTERMouseOverTooltipsHtml,
    SCATTERMouseOverTooltipsPosition = SCATTERMouseOverTooltipsPosition,
    SCATTERMouseOverTooltipsBackgroundColor = SCATTERMouseOverTooltipsBackgroundColor,
    SCATTERMouseOverTooltipsBorderStyle = SCATTERMouseOverTooltipsBorderStyle,
    SCATTERMouseOverTooltipsBorderWidth = SCATTERMouseOverTooltipsBorderWidth,
    SCATTERMouseOverTooltipsPadding = SCATTERMouseOverTooltipsPadding,
    SCATTERMouseOverTooltipsBorderRadius = SCATTERMouseOverTooltipsBorderRadius,
    SCATTERMouseOverTooltipsOpacity = SCATTERMouseOverTooltipsOpacity,
    ARCxlink = ARCxlink,
    ARCMouseEvent = ARCMouseEvent,
    ARCMouseClickDisplay = ARCMouseClickDisplay,
    ARCMouseClickColor = ARCMouseClickColor,
    ARCMouseClickArcOpacity = ARCMouseClickArcOpacity,
    ARCMouseClickArcStrokeColor = ARCMouseClickArcStrokeColor,
    ARCMouseClickArcStrokeWidth = ARCMouseClickArcStrokeWidth,
    ARCMouseClickTextFromData = ARCMouseClickTextFromData,
    ARCMouseClickTextOpacity = ARCMouseClickTextOpacity,
    ARCMouseClickTextColor = ARCMouseClickTextColor,
    ARCMouseClickTextSize = ARCMouseClickTextSize,
    ARCMouseClickTextPostionX = ARCMouseClickTextPostionX,
    ARCMouseClickTextPostionY = ARCMouseClickTextPostionY,
    ARCMouseClickTextDrag = ARCMouseClickTextDrag,
    ARCMouseDownDisplay = ARCMouseDownDisplay,
    ARCMouseDownColor = ARCMouseDownColor,
    ARCMouseDownArcOpacity = ARCMouseDownArcOpacity,
    ARCMouseDownArcStrokeColor = ARCMouseDownArcStrokeColor,
    ARCMouseDownArcStrokeWidth = ARCMouseDownArcStrokeWidth,
    ARCMouseEnterDisplay = ARCMouseEnterDisplay,
    ARCMouseEnterColor = ARCMouseEnterColor,
    ARCMouseEnterArcOpacity = ARCMouseEnterArcOpacity,
    ARCMouseEnterArcStrokeColor = ARCMouseEnterArcStrokeColor,
    ARCMouseEnterArcStrokeWidth = ARCMouseEnterArcStrokeWidth,
    ARCMouseLeaveDisplay = ARCMouseLeaveDisplay,
    ARCMouseLeaveColor = ARCMouseLeaveColor,
    ARCMouseLeaveArcOpacity = ARCMouseLeaveArcOpacity,
    ARCMouseLeaveArcStrokeColor = ARCMouseLeaveArcStrokeColor,
    ARCMouseLeaveArcStrokeWidth = ARCMouseLeaveArcStrokeWidth,
    ARCMouseMoveDisplay = ARCMouseMoveDisplay,
    ARCMouseMoveColor = ARCMouseMoveColor,
    ARCMouseMoveArcOpacity = ARCMouseMoveArcOpacity,
    ARCMouseMoveArcStrokeColor = ARCMouseMoveArcStrokeColor,
    ARCMouseMoveArcStrokeWidth = ARCMouseMoveArcStrokeWidth,
    ARCMouseOutDisplay = ARCMouseOutDisplay,
    ARCMouseOutAnimationTime = ARCMouseOutAnimationTime,
    ARCMouseOutColor = ARCMouseOutColor,
    ARCMouseOutArcOpacity = ARCMouseOutArcOpacity,
    ARCMouseOutArcStrokeColor = ARCMouseOutArcStrokeColor,
    ARCMouseOutArcStrokeWidth = ARCMouseOutArcStrokeWidth,
    ARCMouseUpDisplay = ARCMouseUpDisplay,
    ARCMouseUpColor = ARCMouseUpColor,
    ARCMouseUpArcOpacity = ARCMouseUpArcOpacity,
    ARCMouseUpArcStrokeColor = ARCMouseUpArcStrokeColor,
    ARCMouseUpArcStrokeWidth = ARCMouseUpArcStrokeWidth,
    ARCMouseOverDisplay = ARCMouseOverDisplay,
    ARCMouseOverColor = ARCMouseOverColor,
    ARCMouseOverArcOpacity = ARCMouseOverArcOpacity,
    ARCMouseOverArcStrokeColor = ARCMouseOverArcStrokeColor,
    ARCMouseOverArcStrokeWidth = ARCMouseOverArcStrokeWidth,
    ARCMouseOverTooltipsSetting = ARCMouseOverTooltipsSetting,
    ARCMouseOverTooltipsHtml = ARCMouseOverTooltipsHtml,
    ARCMouseOverTooltipsPosition = ARCMouseOverTooltipsPosition,
    ARCMouseOverTooltipsBackgroundColor = ARCMouseOverTooltipsBackgroundColor,
    ARCMouseOverTooltipsBorderStyle = ARCMouseOverTooltipsBorderStyle,
    ARCMouseOverTooltipsBorderWidth = ARCMouseOverTooltipsBorderWidth,
    ARCMouseOverTooltipsPadding = ARCMouseOverTooltipsPadding,
    ARCMouseOverTooltipsBorderRadius = ARCMouseOverTooltipsBorderRadius,
    ARCMouseOverTooltipsOpacity = ARCMouseOverTooltipsOpacity,
    GENExlink = GENExlink,
    GENEMouseEvent = GENEMouseEvent,
    GENEMouseClickDisplay = GENEMouseClickDisplay,
    GENEMouseClickColor = GENEMouseClickColor,
    GENEMouseClickArcOpacity = GENEMouseClickArcOpacity,
    GENEMouseClickArcStrokeColor = GENEMouseClickArcStrokeColor,
    GENEMouseClickArcStrokeWidth = GENEMouseClickArcStrokeWidth,
    GENEMouseClickTextFromData = GENEMouseClickTextFromData,
    GENEMouseClickTextOpacity = GENEMouseClickTextOpacity,
    GENEMouseClickTextColor = GENEMouseClickTextColor,
    GENEMouseClickTextSize = GENEMouseClickTextSize,
    GENEMouseClickTextPostionX = GENEMouseClickTextPostionX,
    GENEMouseClickTextPostionY = GENEMouseClickTextPostionY,
    GENEMouseClickTextDrag = GENEMouseClickTextDrag,
    GENEMouseDownDisplay = GENEMouseDownDisplay,
    GENEMouseDownColor = GENEMouseDownColor,
    GENEMouseDownArcOpacity = GENEMouseDownArcOpacity,
    GENEMouseDownArcStrokeColor = GENEMouseDownArcStrokeColor,
    GENEMouseDownArcStrokeWidth = GENEMouseDownArcStrokeWidth,
    GENEMouseEnterDisplay = GENEMouseEnterDisplay,
    GENEMouseEnterColor = GENEMouseEnterColor,
    GENEMouseEnterArcOpacity = GENEMouseEnterArcOpacity,
    GENEMouseEnterArcStrokeColor = GENEMouseEnterArcStrokeColor,
    GENEMouseEnterArcStrokeWidth = GENEMouseEnterArcStrokeWidth,
    GENEMouseLeaveDisplay = GENEMouseLeaveDisplay,
    GENEMouseLeaveColor = GENEMouseLeaveColor,
    GENEMouseLeaveArcOpacity = GENEMouseLeaveArcOpacity,
    GENEMouseLeaveArcStrokeColor = GENEMouseLeaveArcStrokeColor,
    GENEMouseLeaveArcStrokeWidth = GENEMouseLeaveArcStrokeWidth,
    GENEMouseMoveDisplay = GENEMouseMoveDisplay,
    GENEMouseMoveColor = GENEMouseMoveColor,
    GENEMouseMoveArcOpacity = GENEMouseMoveArcOpacity,
    GENEMouseMoveArcStrokeColor = GENEMouseMoveArcStrokeColor,
    GENEMouseMoveArcStrokeWidth = GENEMouseMoveArcStrokeWidth,
    GENEMouseOutDisplay = GENEMouseOutDisplay,
    GENEMouseOutAnimationTime = GENEMouseOutAnimationTime,
    GENEMouseOutColor = GENEMouseOutColor,
    GENEMouseOutArcOpacity = GENEMouseOutArcOpacity,
    GENEMouseOutArcStrokeColor = GENEMouseOutArcStrokeColor,
    GENEMouseOutArcStrokeWidth = GENEMouseOutArcStrokeWidth,
    GENEMouseUpDisplay = GENEMouseUpDisplay,
    GENEMouseUpColor = GENEMouseUpColor,
    GENEMouseUpArcOpacity = GENEMouseUpArcOpacity,
    GENEMouseUpArcStrokeColor = GENEMouseUpArcStrokeColor,
    GENEMouseUpArcStrokeWidth = GENEMouseUpArcStrokeWidth,
    GENEMouseOverDisplay = GENEMouseOverDisplay,
    GENEMouseOverColor = GENEMouseOverColor,
    GENEMouseOverArcOpacity = GENEMouseOverArcOpacity,
    GENEMouseOverArcStrokeColor = GENEMouseOverArcStrokeColor,
    GENEMouseOverArcStrokeWidth = GENEMouseOverArcStrokeWidth,
    GENEMouseOverTooltipsSetting = GENEMouseOverTooltipsSetting,
    GENEMouseOverTooltipsHtml = GENEMouseOverTooltipsHtml,
    GENEMouseOverTooltipsPosition = GENEMouseOverTooltipsPosition,
    GENEMouseOverTooltipsBackgroundColor = GENEMouseOverTooltipsBackgroundColor,
    GENEMouseOverTooltipsBorderStyle = GENEMouseOverTooltipsBorderStyle,
    GENEMouseOverTooltipsBorderWidth = GENEMouseOverTooltipsBorderWidth,
    GENEMouseOverTooltipsPadding = GENEMouseOverTooltipsPadding,
    GENEMouseOverTooltipsBorderRadius = GENEMouseOverTooltipsBorderRadius,
    GENEMouseOverTooltipsOpacity = GENEMouseOverTooltipsOpacity,
    LOLLIPOPxlink = LOLLIPOPxlink,
    LOLLIPOPMouseEvent = LOLLIPOPMouseEvent,
    LOLLIPOPMouseClickDisplay = LOLLIPOPMouseClickDisplay,
    LOLLIPOPMouseClickColor = LOLLIPOPMouseClickColor,
    LOLLIPOPMouseClickCircleSize = LOLLIPOPMouseClickCircleSize,
    LOLLIPOPMouseClickCircleOpacity = LOLLIPOPMouseClickCircleOpacity,
    LOLLIPOPMouseClickCircleStrokeColor = LOLLIPOPMouseClickCircleStrokeColor,
    LOLLIPOPMouseClickCircleStrokeWidth = LOLLIPOPMouseClickCircleStrokeWidth,
    LOLLIPOPMouseClickTextFromData = LOLLIPOPMouseClickTextFromData,
    LOLLIPOPMouseClickTextOpacity = LOLLIPOPMouseClickTextOpacity,
    LOLLIPOPMouseClickTextColor = LOLLIPOPMouseClickTextColor,
    LOLLIPOPMouseClickTextSize = LOLLIPOPMouseClickTextSize,
    LOLLIPOPMouseClickTextPostionX = LOLLIPOPMouseClickTextPostionX,
    LOLLIPOPMouseClickTextPostionY = LOLLIPOPMouseClickTextPostionY,
    LOLLIPOPMouseClickTextDrag = LOLLIPOPMouseClickTextDrag,
    LOLLIPOPMouseDownDisplay = LOLLIPOPMouseDownDisplay,
    LOLLIPOPMouseDownColor = LOLLIPOPMouseDownColor,
    LOLLIPOPMouseDownCircleSize = LOLLIPOPMouseDownCircleSize,
    LOLLIPOPMouseDownCircleOpacity = LOLLIPOPMouseDownCircleOpacity,
    LOLLIPOPMouseDownCircleStrokeColor = LOLLIPOPMouseDownCircleStrokeColor,
    LOLLIPOPMouseDownCircleStrokeWidth = LOLLIPOPMouseDownCircleStrokeWidth,
    LOLLIPOPMouseEnterDisplay = LOLLIPOPMouseEnterDisplay,
    LOLLIPOPMouseEnterColor = LOLLIPOPMouseEnterColor,
    LOLLIPOPMouseEnterCircleSize = LOLLIPOPMouseEnterCircleSize,
    LOLLIPOPMouseEnterCircleOpacity = LOLLIPOPMouseEnterCircleOpacity,
    LOLLIPOPMouseEnterCircleStrokeColor = LOLLIPOPMouseEnterCircleStrokeColor,
    LOLLIPOPMouseEnterCircleStrokeWidth = LOLLIPOPMouseEnterCircleStrokeWidth,
    LOLLIPOPMouseLeaveDisplay = LOLLIPOPMouseLeaveDisplay,
    LOLLIPOPMouseLeaveColor = LOLLIPOPMouseLeaveColor,
    LOLLIPOPMouseLeaveCircleSize = LOLLIPOPMouseLeaveCircleSize,
    LOLLIPOPMouseLeaveCircleOpacity = LOLLIPOPMouseLeaveCircleOpacity,
    LOLLIPOPMouseLeaveCircleStrokeColor = LOLLIPOPMouseLeaveCircleStrokeColor,
    LOLLIPOPMouseLeaveCircleStrokeWidth = LOLLIPOPMouseLeaveCircleStrokeWidth,
    LOLLIPOPMouseMoveDisplay = LOLLIPOPMouseMoveDisplay,
    LOLLIPOPMouseMoveColor = LOLLIPOPMouseMoveColor,
    LOLLIPOPMouseMoveCircleSize = LOLLIPOPMouseMoveCircleSize,
    LOLLIPOPMouseMoveCircleOpacity = LOLLIPOPMouseMoveCircleOpacity,
    LOLLIPOPMouseMoveCircleStrokeColor = LOLLIPOPMouseMoveCircleStrokeColor,
    LOLLIPOPMouseMoveCircleStrokeWidth = LOLLIPOPMouseMoveCircleStrokeWidth,
    LOLLIPOPMouseOutDisplay = LOLLIPOPMouseOutDisplay,
    LOLLIPOPMouseOutAnimationTime = LOLLIPOPMouseOutAnimationTime,
    LOLLIPOPMouseOutColor = LOLLIPOPMouseOutColor,
    LOLLIPOPMouseOutCircleSize = LOLLIPOPMouseOutCircleSize,
    LOLLIPOPMouseOutCircleOpacity = LOLLIPOPMouseOutCircleOpacity,
    LOLLIPOPMouseOutCircleStrokeColor = LOLLIPOPMouseOutCircleStrokeColor,
    LOLLIPOPMouseOutCircleStrokeWidth = LOLLIPOPMouseOutCircleStrokeWidth,
    LOLLIPOPMouseUpDisplay = LOLLIPOPMouseUpDisplay,
    LOLLIPOPMouseUpColor = LOLLIPOPMouseUpColor,
    LOLLIPOPMouseUpCircleSize = LOLLIPOPMouseUpCircleSize,
    LOLLIPOPMouseUpCircleOpacity = LOLLIPOPMouseUpCircleOpacity,
    LOLLIPOPMouseUpCircleStrokeColor = LOLLIPOPMouseUpCircleStrokeColor,
    LOLLIPOPMouseUpCircleStrokeWidth = LOLLIPOPMouseUpCircleStrokeWidth,
    LOLLIPOPMouseOverDisplay = LOLLIPOPMouseOverDisplay,
    LOLLIPOPMouseOverColor = LOLLIPOPMouseOverColor,
    LOLLIPOPMouseOverCircleSize = LOLLIPOPMouseOverCircleSize,
    LOLLIPOPMouseOverCircleOpacity = LOLLIPOPMouseOverCircleOpacity,
    LOLLIPOPMouseOverCircleStrokeColor = LOLLIPOPMouseOverCircleStrokeColor,
    LOLLIPOPMouseOverCircleStrokeWidth = LOLLIPOPMouseOverCircleStrokeWidth,
    LOLLIPOPMouseOverTooltipsSetting = LOLLIPOPMouseOverTooltipsSetting,
    LOLLIPOPMouseOverTooltipsHtml = LOLLIPOPMouseOverTooltipsHtml,
    LOLLIPOPMouseOverTooltipsPosition = LOLLIPOPMouseOverTooltipsPosition,
    LOLLIPOPMouseOverTooltipsBackgroundColor = LOLLIPOPMouseOverTooltipsBackgroundColor,
    LOLLIPOPMouseOverTooltipsBorderStyle = LOLLIPOPMouseOverTooltipsBorderStyle,
    LOLLIPOPMouseOverTooltipsBorderWidth = LOLLIPOPMouseOverTooltipsBorderWidth,
    LOLLIPOPMouseOverTooltipsPadding = LOLLIPOPMouseOverTooltipsPadding,
    LOLLIPOPMouseOverTooltipsBorderRadius = LOLLIPOPMouseOverTooltipsBorderRadius,
    LOLLIPOPMouseOverTooltipsOpacity = LOLLIPOPMouseOverTooltipsOpacity)
  # create widget
  htmlwidgets::createWidget(
    name = 'interacCircos',
    x,
    width = width,
    height = height,
    elementId = elementId
  )
}

#' Shiny bindings for interacCircos
#'
#' Output and render functions for using interacCircos within Shiny
#' applications and interactive Rmd documents.
#'
#' @param outputId output variable to read from
#' @param width,height Must be a valid CSS unit (like \code{'100\%'},
#'   \code{'400px'}, \code{'auto'}) or a number, which will be coerced to a
#'   string and have \code{'px'} appended.
#' @param expr An expression that generates a interacCircos
#' @param env The environment in which to evaluate \code{expr}.
#' @param quoted Is \code{expr} a quoted expression (with \code{quote()})? This
#'   is useful if you want to save an expression in a variable.
#'
#' @return The output and render functions for shiny
#'
#' @name Circos-shiny
#'
#' @export
CircosOutput <- function(outputId, width = '100%', height = '100%'){
  htmlwidgets::shinyWidgetOutput(outputId, 'interacCircos', width, height, package = 'interacCircos')
}

#' @rdname Circos-shiny
#' @export
renderCircos <- function(expr, env = parent.frame(), quoted = FALSE) {
  if (!quoted) { expr <- substitute(expr) } # force quoted
  htmlwidgets::shinyRenderWidget(expr, CircosOutput, env, quoted = TRUE)
}

#' Create a BACKGROUND module to be added to a moduleList
#'
#' Simple background to display behind another module
#'
#' @param modulename The name of the new module.
#' @param compareGroup The group number of this module in compare module
#' @param fillColors The color of the background element, in hexadecimal RGB format.
#' @param borderColors The color of the background borders, in hexadecimal RGB format.
#' @param axisShow Whether show a axis or not
#' @param axisWidth,axisColor,axisOpacity,axisNum The color, opacity value and number of line for axis
#' @param minRadius,maxRadius Where the module should begin and end
#' @param borderSize The thickness of the background borders.
#' @param animationDisplay Whether display a animation or not
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#'
#' @param ... Ignored
#'
#' @return The module tracks for background modules.
#'
#' @examples
#' Circos(CircosBackground('bg01', fillColors="#FFEEEE", borderSize = 1))
#'
#' @export
CircosBackground <- function(modulename,compareGroup = 1, fillColors = "#EEEEFF", borderColors = "#000000",
                                   axisShow = FALSE, axisColor = "#000", axisOpacity = 0.5, axisNum = 4, axisWidth = 0.3,
                                   maxRadius = 190, minRadius = 105, borderSize = 0.3,
                                   animationDisplay = FALSE, animationTime = 2000, animationDelay=20,
                                   animationType = "bounce",...){
  module1 = paste("BACKGROUND", modulename, sep="_")
  module2 = list(compareGroup = compareGroup,axisShow = axisShow, axisWidth = axisWidth, axisColor = axisColor,
                axisOpacity = axisOpacity, axisNum = axisNum, BACKGROUNDAnimationDisplay = animationDisplay,
                BACKGROUNDAnimationTime = animationTime, BACKGROUNDAnimationDelay = animationDelay,
                BACKGROUNDAnimationType = animationType, BgouterRadius = maxRadius, BginnerRadius = minRadius,
                BgFillColor = fillColors, BgborderColor = borderColors, BgborderSize = borderSize)
  module = CircosModuleList() + list(list(module1, module2))
  return(module)
}

#' @title Create Text module to be added to a moduleList
#'
#' @description Simple text annotation displayed in the visualization
#'
#' @param modulename The name of the new module.
#'
#' @param text The text to be displayed.
#'
#' @param x,y Coordinates of the lower left corner of the annotation
#' @param size Font size, with units specified (such as em or px).
#' @param color Font color, in hexadecimal RGB format.
#' @param weight Font weight. Can be "normal", "bold", "bolder" or "lighter".
#' @param opacity Font opacity.
#' @param rotateRate ratate rate for text
#' @param animationDisplay Whether display a animation or not
#' @param animationInitialSize Initial text size in animation
#' @param animationInitialWeight Initial text weight in animation
#' @param animationInitialColor Initial text color in animation
#' @param animationInitialOpacity Initial text opacity in animation
#' @param animationInitialPositionX,animationInitialPositionY Initial text coordinates in animation(The parameter x,y will become the final position for text if animation displayed)
#' @param animationInitialRotate Initial rotate rate in animation
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#'
#' @param ... Ignored
#'
#' @return The module tracks for text modules.
#'
#' @examples
#' Circos(CircosText('text01', 'Annotation', color = '#DD2222', x = -40))
#'
#' @export
CircosText <- function(modulename, text,
                             x = 0, y = 0, size = "1.2em", weight = "bold", opacity = 1, color = "#000000",
                             rotateRate = 0, animationDisplay = FALSE, animationInitialSize = 20,
                             animationInitialWeight = "bold", animationInitialColor = "black",
                             animationInitialOpacity = 1, animationInitialPositionX = 0,
                             animationInitialPositionY = 0 , animationInitialRotate = 0,
                             animationDelay = 50, animationTime = 1000, animationType = "linear", ...){
  module1 = paste("TEXT", modulename, sep="_")
  module2 = list(x = x, y = y, textSize = size,textWeight = weight, textColor = color, textOpacity = opacity,
                text = text, rotateRate = rotateRate, TEXTAnimationDisplay = animationDisplay,
                TEXTAnimationInitialSize = animationInitialSize, TEXTAnimationInitialWeight = animationInitialWeight,
                TEXTAnimationInitialColor = animationInitialColor, TEXTAnimationInitialOpacity = animationInitialOpacity,
                TEXTAnimationInitialPositionX = animationInitialPositionX, TEXTAnimationInitialPositionY = animationInitialPositionY,
                TEXTAnimationInitialRotate = animationInitialRotate, TEXTAnimationDelay = animationDelay,
                TEXTAnimationTime = animationTime, TEXTAnimationType = animationType)
  module = CircosModuleList() + list(list(module1, module2))
  return(module)
}

#' @title Create a LEGEND module to a moduleList
#'
#' @description Simple legend annotation displayed in the visualization.
#'
#' @param modulename The name of the new module.
#'
#' @param x,y Coordinates of the lower left corner of the annotation
#' @param title The title for legend
#' @param size Font size for title, with units specified (such as em or px).
#' @param weight Font weight for title. Can be "normal", "bold", "bolder" or "lighter".
#' @param GapBetweenGraphicText Gap between icon and text in legend.
#' @param GapBetweenLines Gap between each two lines in legend
#' @param data A list of legend with details including type, color, opacity, circleSize, rectSize, lineWidth,
#'             lineHeight, text, textSize and textWeight. Details can be found on document.
#'
#' @param ... Ignored
#'
#' @return The module tracks for legend modules.
#' 
#' @examples
#' legend1 <- list(type= "circle", color="#1E77B4",opacity="1.0",circleSize="8",text= "C.CK", 
#' textSize= "14",textWeight="normal")
#' legend2 <- list(type= "circle", color="#AEC7E8",opacity="1.0",circleSize="8",text= "C.NPK", 
#' textSize= "14",textWeight="normal")
#' Circos(CircosLegend('legend01', title = "legend",data=list(legend1,legend2),size = 20))
#'
#' @export
CircosLegend <- function(modulename, x = 20, y = 20, title = "legend", size = 6, weight = "normal",
                               GapBetweenGraphicText = 5, GapBetweenLines = 20, data, ...){
  module1 = paste("LEGEND", modulename, sep="_")
  module2 = list(x = x, y = y, title = title, titleSize = size, titleWeight = weight,
                GapBetweenGraphicText = GapBetweenGraphicText, GapBetweenLines = GapBetweenLines)
  module3 = data
  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' Create a AUXILIAYLINE module to a moduleList
#'
#' A auxiliary line displayed in the visualization
#'
#' @param modulename The name of the new module.
#'
#' @param startX,startY Start coordinates for auxiliary line.
#' @param endX,endY End coordinates for auxiliary line.
#' @param color Color for auxiliary line
#' @param width Width for auxiliary line
#' @param type Type for auxiliary line, could be straight/curve/broken
#' @param lineType Line type, could be solid/dot
#' @param controlPointX,controlPointY The middle point coordinates for curve and broken
#' @param dashArray The dash gap width
#' @param marker Whether display a marker on the end of line
#' @param markerType Type of marker, could be circle/square/arrow/stub
#' @param markerColor,markerHeight,markerWidth Color, Height and Width for marker
#' @param markerPosition 1 means start, 2 means end, 3 means both
#' @param animationDisplay whether display animation
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#'
#' @param ... Ignored
#'
#' @return The module tracks for auxliary line modules.
#'
#' @examples
#' Circos(CircosAuxLine('AuxLine01'))
#'
#' @export
CircosAuxLine <- function(modulename, startX = 20, startY = 20, endX = 120, endY = 120, color = "red", width = 0.5,
                                type = "straight", controlPointX = 0, controlPointY = 0, lineType = "solid",
                                dashArray = 3, marker = TRUE, markerType = "circle", markerColor = "blue",
                                markerHeight = 5, markerWidth = 5, markerPosition = 2, animationDisplay = FALSE,
                                animationTime = 50, animationDelay = 1000, animationType = "linear", ...){
  module1 = paste("AUXILIARYLINE", modulename, sep="_")
  module2 = list(startX = startX, startY = startY, endX = endX, endY = endY, AUXILIARYLINEColor = color,
                AUXILIARYLINEWidth = width, AUXILIARYLINEType = type, AUXILIARYLINEControlPointX = controlPointX,
                AUXILIARYLINEControlPointY = controlPointY, AUXILIARYLINELineType = lineType,
                AUXILIARYLINEDashArray = dashArray, AUXILIARYLINEMarker = marker, AUXILIARYLINEMarkerType = markerType,
                AUXILIARYLINEMarkerColor = markerColor, AUXILIARYLINEMarkerHeight = markerHeight,
                AUXILIARYLINEMarkerWidth = markerWidth, AUXILIARYLINEMarkerPosition = markerPosition,
                AUXILIARYLINEanimationDisplay = animationDisplay, AUXILIARYLINEAnimationTime = animationTime,
                AUXILIARYLINEAnimationDelay = animationDelay, AUXILIARYLINEAnimationType = animationType)
  module = CircosModuleList() + list(list(module1, module2))
  return(module)
}

#' @title Create a CNV module to a moduleList
#'
#' @description A copy number variance module displayed in the visualization
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of this module in compare module
#' @param maxRadius,minRadius Where the module should begin and end.
#' @param width Width for CNV module
#' @param color Color for CNV module
#' @param ValueAxisManualScale Whether manually control the scale of value
#' @param ValueAxisMaxScale,ValueAxisMinScale The max and min scale value for manually control
#' @param strokeColor,strokeWidth The color and width for stroke
#' @param opacity The opacity for module
#' @param animationDisplay Whether display animation
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#' @param data A list of CNV with details including start, end, value, link, color and html.
#'             Details can be found on document.
#'
#' @param ... Ignored
#'
#' @return The module tracks for cnv modules.
#'
#' @examples
#' cnvData<-cnvExample
#' Circos(CircosCnv('Cnv01',maxRadius =175, minRadius =116, data =cnvData,width=2,color = "#4876FF")+
#' CircosBackground("bg01",minRadius = 116,maxRadius = 175,fillColors = "#F2F2F2",axisShow = TRUE),
#' CNVMouseOverDisplay = TRUE)
#'
#' @export
CircosCnv <- function(modulename, compareGroup = 1, maxRadius = 200, minRadius = 190, width = 10, color = "#CAE1FF",
                            ValueAxisManualScale = FALSE, ValueAxisMaxScale = 10, ValueAxisMinScale = 0,
                            strokeColor = "black", strokeWidth = 1, opacity = 1, animationDisplay = FALSE,
                            animationTime = 2000, animationDelay = 50, animationType = "bounce", data, ...){
  module1 = paste("CNV", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, maxRadius = maxRadius, minRadius = minRadius, CNVwidth = width,
                CNVColor = color, ValueAxisManualScale = ValueAxisManualScale, ValueAxisMaxScale = ValueAxisMaxScale,
                ValueAxisMinScale = ValueAxisMinScale, strokeColor = strokeColor, strokeWidth = strokeWidth,
                opacity = opacity, CNVAnimationDisplay = animationDisplay, CNVAnimationTime = animationTime,
                CNVAnimationDelay = animationDelay, CNVAnimationType = animationType)
  module3 = unname(alply(data, 1, as.list))
  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Cnv module example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 7 columns:
#' \describe{
#'   \item{chr}{chromosome}
#'   \item{start}{start position}
#'   \item{end}{end position}
#'   \item{value}{value}
#'   \item{link}{hyperlink for cnv}
#'   \item{color}{color}
#'   \item{html}{The external html language}
#' }
"cnvExample"

#' @title Create a HEATMAP module to a moduleList
#'
#' @description A heatmap plot displayed in the visualization
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of this module in compare module
#' @param maxRadius,minRadius Where the module should begin and end.
#' @param minColor The color for heatmap with min value
#' @param maxColor The color for heatmap with max value
#' @param ValueAxisManualScale Whether manually control the scale of value
#' @param ValueAxisMaxScale,ValueAxisMinScale The max and min scale value for manually control
#' @param totalLayer The color and width for stroke
#' @param animationDisplay Whether display animation
#' @param animationDirection The direction for animation. O2I: from outside to inside, I2O: from inside to outside
#' @param animationColorDirection The color changing in animation. L2C: lowest to customized, H2C: highest to customized, the customized color should be defined in data
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#' @param data A list of value in heatmap plot with details including chr, start, end, value, name, layer and html.
#'             Details can be found on document.
#'
#' @param ... Ignored
#'
#' @return The module tracks for heatmap modules.
#'
#' @examples
#' heatmapData<-heatmapExample
#' Circos(CircosHeatmap('Heatmap01', maxRadius= 180, minRadius = 100, data=heatmapData,totalLayer = 3),
#' genome = list("2L"=23011544,"2R"=21146708,"3L"=24543557,"3R"=27905053,"4"=1351857,"X"=22422827),
#' HEATMAPMouseEvent = TRUE,HEATMAPMouseOverDisplay = TRUE)
#'
#' @export
CircosHeatmap <- function(modulename, compareGroup = 1, maxRadius = 180, minRadius = 100, minColor = "red",
                                maxColor = "green", ValueAxisManualScale = FALSE, ValueAxisMaxScale = 10,
                                ValueAxisMinScale = 0, totalLayer = 1, animationDisplay = FALSE,
                                animationDirection = "O2I", animationColorDirection = "L2C",
                                animationTime = 2000, animationDelay = 20, animationType = "bounce", data, ...){
  module1 = paste("HEATMAP", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, outerRadius = maxRadius, innerRadius = minRadius, maxColor = maxColor,
                minColor = minColor, ValueAxisManualScale = ValueAxisManualScale, ValueAxisMaxScale = ValueAxisMaxScale,
                ValueAxisMinScale = ValueAxisMinScale, totalLayer = totalLayer, HEATMAPAnimationDisplay = animationDisplay,
                HEATMAPAnimationDirection = animationDirection, HEATMAPAnimationColorDirection = animationColorDirection,
                HEATMAPAnimationTime = animationTime, HEATMAPAnimationDelay = animationDelay,
                HEATMAPAnimationType = animationType)
  module3 = unname(alply(data, 1, as.list))
  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Heatmap plot example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 7 columns:
#' \describe{
#'   \item{chr}{chromosome}
#'   \item{start}{start position}
#'   \item{end}{end position}
#'   \item{name}{name for description}
#'   \item{value}{value}
#'   \item{layer}{layer number}
#'   \item{html}{The external html language}
#' }
"heatmapExample"

#' @title Create a BUBBLE module to a moduleList
#'
#' @description A bubble plot displayed in the visualization
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of this module in compare module
#' @param maxRadius,minRadius Where the module should begin and end.
#' @param blockStroke Whether display the stroke between each bubble block
#' @param blockStrokeColor Stroke color for block
#' @param blockStrokeWidth Stroke width for block
#' @param blockFill Whether fill a block or not
#' @param blockFillColor The color for filling the block
#' @param bubbleMaxSize The max size for bubble
#' @param bubbleMinSize The min size for bubble
#' @param maxColor The color the bubble with max value
#' @param minColor The color the bubble with min value
#' @param ValueAxisManualScale Whether manually control the scale of value
#' @param ValueAxisMaxScale,ValueAxisMinScale The max and min scale value for manually control
#' @param totalLayer The color and width for stroke
#' @param animationDisplay Whether display animation
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#' @param data A list of value in bubble plot with details including chr, start, end, value, name, layer, color and html.
#'             Details can be found on document.
#'
#' @param ... Ignored
#'
#' @return The module tracks for bubble modules.
#'
#' @examples
#' bubbleData<-bubbleExample
#' Circos(CircosBubble('Bubble01', maxRadius = 230, minRadius = 170, data=bubbleData, 
#' blockStroke = TRUE, bubbleMaxSize =10, bubbleMinSize = 2, maxColor = "red", minColor = "yellow",
#' totalLayer =3, animationDisplay = TRUE, animationType="linear"),
#' genome = list("2L"=23011544,"2R"=21146708,"3L"=24543557,"3R"= 27905053,"X"=22422827,"4"=1351857),
#' BUBBLEMouseOverDisplay =TRUE,innerRadius = 236)
#'
#' @export
CircosBubble <- function(modulename, compareGroup = 1, maxRadius = 200, minRadius = 50, blockStroke = TRUE,
                                blockStrokeColor = "black", blockStrokeWidth = 1, blockFill = FALSE,
                                blockFillColor = "white", bubbleMaxSize = 5, bubbleMinSize = 2, minColor = "red",
                                maxColor = "green", ValueAxisManualScale = FALSE, ValueAxisMaxScale = 10,
                                ValueAxisMinScale = 0, totalLayer = 1, animationDisplay = FALSE,
                                animationTime = 2000, animationDelay = 20, animationType = "bounce", data, ...){
  module1 = paste("BUBBLE", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, maxRadius = maxRadius, minRadius = minRadius, blockStroke = blockStroke,
                blockStrokeColor = blockStrokeColor, blockStrokeWidth = blockStrokeWidth, blockFill = blockFill,
                blockFillColor = blockFillColor, bubbleMaxSize = bubbleMaxSize, bubbleMinSize = bubbleMinSize,
                maxColor = maxColor, minColor = minColor, ValueAxisManualScale = ValueAxisManualScale,
                ValueAxisMaxScale = ValueAxisMaxScale, ValueAxisMinScale = ValueAxisMinScale, totalLayer = totalLayer,
                BUBBLEAnimationDisplay = animationDisplay, BUBBLEAnimationTime = animationTime,
                BUBBLEAnimationDelay = animationDelay, BUBBLEAnimationType = animationType)
  module3 = unname(alply(data, 1, as.list))
  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Bubble plot example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 8 columns:
#' \describe{
#'   \item{chr}{chromosome}
#'   \item{start}{start position}
#'   \item{end}{end position}
#'   \item{name}{name for description}
#'   \item{value}{value}
#'   \item{color}{specified color for bubble}
#'   \item{layer}{layer number}
#'   \item{html}{The external html language}
#' }
"bubbleExample"


#' @title Create a GENE module to a moduleList
#'
#' @description A number of genes with different functional region displayed in the visualization
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of this module in compare module
#' @param outerRadius,innerRadius Where the module should begin and end.
#' @param pathColor The color for path between gene elements
#' @param pathWidth The width for path between gene elements
#' @param arrow Whether display arrows on path
#' @param arrowGap,arrowColor,arrowSize The gap, color and size for arrow
#' @param cdsColor,cdsStrokeColor,cdsStrokeWidth The color, stroke color and stroke width for coding
#' @param utrWidth,utrColor,utrStrokeColor,utrStrokeWidth The max size for bubble
#' @param animationDisplay Whether display animation
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#' @param data A list of gene with details including chr, strand, start, end, type, name, link and html.
#'             Details can be found on document.
#'
#' @param ... Ignored
#'
#' @return The module tracks for gene modules.
#' 
#' @examples
#' geneData<-geneExample
#' Circos(CircosGene('Gene01', outerRadius = 195, innerRadius = 180, data=geneData,arrowGap = 10,
#'  arrowColor = "black",arrowSize = "12px",cdsColor = "#1e77b3",cdsStrokeColor = "#1e77b3",
#'  cdsStrokeWidth= 5, utrWidth= -2,utrColor= "#fe7f0e",utrStrokeColor= "#fe7f0e",
#'  animationDisplay = TRUE),genome =list("EGFR"=1000), outerRadius = 220)
#'
#' @export
CircosGene <- function(modulename, compareGroup = 1, outerRadius = 180, innerRadius = 150, pathColor = "black",
                              pathWidth = 1, arrow = TRUE, arrowGap = 2, arrowColor = "blue",
                              arrowSize = 5, cdsColor = "#1e77b3", cdsStrokeColor = "black",cdsStrokeWidth = 1,
                              utrWidth = -5, utrColor = "blue", utrStrokeColor = "blue", utrStrokeWidth = 1,
                              animationDisplay = FALSE,animationTime = 2000, animationDelay = 20,
                              animationType = "bounce", data, ...){
  module1 = paste("GENE", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, outerRadius = outerRadius, innerRadius = innerRadius, pathColor = pathColor,
                pathWidth = pathWidth, arrow = arrow, arrowGap = arrowGap, arrowColor = arrowColor, arrowSize = arrowSize,
                cdsColor = cdsColor, cdsStrokeColor = cdsStrokeColor, cdsStrokeWidth = cdsStrokeWidth,
                utrWidth = utrWidth, utrColor = utrColor, utrStrokeColor = utrStrokeColor,utrStrokeWidth = utrStrokeWidth,
                GENEAnimationDisplay = animationDisplay, GENEAnimationTime = animationTime,
                GENEAnimationDelay = animationDelay, GENEAnimationType = animationType)
  module3 = unname(alply(data, 1, as.list))
  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Gene plot example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 8 columns:
#' \describe{
#'   \item{chr}{chromosome}
#'   \item{strand}{strand, - or +}
#'   \item{start}{start position}
#'   \item{end}{end position}
#'   \item{type}{region type, gene or utr or cds}
#'   \item{name}{name for description}
#'   \item{link}{hyperlink for this region}
#'   \item{html}{The external html language}
#' }
"geneExample"


#' @title Create a module with SNPs to be added to a moduleList
#'
#' @description SNPs are defined by genomic coordinates and associated with a numerical value
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of this module in compare module
#' @param maxRadius,minRadius Where the module should begin and end
#' @param fillColorType The type of filling color, could be either specific or r2(means based on r2)
#' @param fillColor If specific, the color for SNP filling
#' @param fillr2Color If r2, the color for SNP filling
#' @param ValueAxisManualScale Whether manually control the scale of value
#' @param ValueAxisMaxScale,ValueAxisMinScale The max and min scale value for manually control
#' @param pointType The type of SNP point, could be circle or rect
#' @param circleSize If circle, the size for SNP circle
#' @param rectWidth If rect, the width for SNP rect
#' @param rectHeight If rect, the height for SNP rect
#' @param animationDisplay Whether display animation
#' @param animationInitialPositionX,animationInitialPositionY The initial position coordinates for animation
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#' @param data A list of SNP value with details including chr, pos, value, des, color, r2value, link, index, image and html.
#'             Details can be found on document.
#'
#' @param ... Ignored
#'
#' @return The module tracks for snp modules.
#'
#' @examples
#' snpData<-snpExample
#' Circos(CircosSnp('SNP01', minRadius =150, maxRadius = 190, data = snpExample,fillColor= "#9ACD32",
#'    circleSize= 2, SNPAnimationDisplay=TRUE,SNPAnimationTime= 2000,SNPAnimationDelay= 0,
#'     SNPAnimationType= "linear") + CircosBackground('BG01',minRadius = 145, maxRadius = 200))
#'
#' @export
CircosSnp <- function(modulename, compareGroup = 1, minRadius = 153, maxRadius = 205, fillColorType = "specific",
                             fillColor = "#9400D3", fillr2Color = c("13#ff0031","#ff0031","#ff0031","#ff0031","#ff0031"),
                             ValueAxisManualScale= FALSE, ValueAxisMaxScale = 10, ValueAxisMinScale = 0,
                             pointType = "circle", circleSize = 2, rectWidth = 2, rectHeight = 2,
                             animationDisplay = FALSE, animationInitialPositionX = 0, animationInitialPositionY = 0,
                             animationTime = 2000, animationDelay = 20, animationType = "bounce", data, ...){

  module1 = paste("SNP", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, minRadius = minRadius, maxRadius = maxRadius,
                SNPFillColorType = fillColorType, SNPFillColor = fillColor, SNPFillr2Color = fillr2Color,
                ValueAxisManualScale = ValueAxisManualScale, ValueAxisMaxScale = ValueAxisMaxScale,
                ValueAxisMinScale = ValueAxisMinScale, PointType = pointType, circleSize = circleSize,
                rectWidth = rectWidth, rectHeight = rectHeight, SNPAnimationDisplay = animationDisplay,
                SNPAnimationInitialPositionX = animationInitialPositionX, SNPAnimationInitialPositionY = animationInitialPositionY,
                SNPAnimationTime = animationTime, SNPAnimationDelay = animationDelay,
                SNPAnimationType = animationType)

  module3 = unname(alply(data, 1, as.list))

  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Snp plot example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 10 columns:
#' \describe{
#'   \item{chr}{chromosome}
#'   \item{pos}{position}
#'   \item{value}{value,such as p-value}
#'   \item{des}{description}
#'   \item{color}{color}
#'   \item{r2value}{r2 value}
#'   \item{link}{hyperlink for snp}
#'   \item{index}{index for combination}
#'   \item{image}{image for combination}
#'   \item{html}{The external html language}
#' }
"snpExample"



#' @title Create a LINK module to a moduleList
#'
#' @description Link two specific region in genome.
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of thic module in compare module
#' @param radius Radius of link circle.
#' @param fillColor Color for link.
#' @param width Width for link.
#' @param type Type of link, could be Q/S/T
#' @param displayLinkAxis Whether display axis for link or not
#' @param axisColor The color for axis
#' @param axisWidth The width for axis
#' @param axisPad The pad for axis
#' @param displayLinkLabel Whether display label for link or not
#' @param labelColor The color for label
#' @param labelSize The size for label
#' @param labelPad The pad for label
#' @param animationDisplay Whether display animation
#' @param animationDirection The direction of link animation, could be 1to2 or 2to1
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#' @param data A list of link with details including g1chr, g1start, g1end, g2chr, g2start, g2end, g1name, g2name,
#'             fusion, link and html. Details can be found on document.
#'
#' @param ... Ignored
#'
#' @return The module tracks for link modules.
#'
#' @examples
#' linkData<-linkExample
#' Circos(CircosLink('LINK', data = linkData,LinkRadius= 140,fillColor= "#9e9ac6",width= 2,
#' axisPad= 3,labelPad=8,animationDisplay=TRUE,animationDirection="1to2", animationType= "linear" ))
#'
#' @export
CircosLink <- function(modulename, compareGroup = 1, radius = 108, fillColor = "red", width = 3,
                              type = "Q", displayLinkAxis = TRUE, axisColor = "#B8B8B8", axisWidth = 0.5,
                              axisPad = 3, displayLinkLabel = TRUE, labelColor = "red", labelSize = 13,
                              labelPad = 8, animationDisplay = FALSE, animationDirection = "1to2",
                              animationTime = 2000, animationDelay = 20, animationType = "bounce", data, ...){

  module1 = paste("LINK", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, LinkRadius = radius, LinkFillColor = fillColor,
                LinkWidth = width, LinkType = type, displayLinkAxis = displayLinkAxis,
                LinkAxisColor = axisColor, LinkAxisWidth = axisWidth, LinkAxisPad = axisPad,
                displayLinkLabel = displayLinkLabel, LinkLabelColor = labelColor, LinkLabelSize = labelSize,
                LinkLabelPad = labelPad, LINKAnimationDisplay = animationDisplay,
                LINKAnimationDirection = animationDirection,LINKAnimationTime = animationTime,
                LINKAnimationDelay = animationDelay,LINKAnimationType = animationType)

  module3 = unname(alply(data, 1, as.list))

  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Link plot example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 11 columns:
#' \describe{
#'   \item{g1chr}{first chromosome}
#'   \item{g1start}{first start position}
#'   \item{g1end}{first end position}
#'   \item{g2chr}{second chromosome}
#'   \item{g2start}{second start position}
#'   \item{g2end}{second end position}
#'   \item{g1name}{first name}
#'   \item{g2name}{second name}
#'   \item{fusion}{fusion name}
#'   \item{link}{hyperlink for link line}
#'   \item{html}{The external html language}
#' }
"linkExample"


#' @title Create a CHORD module of NG-Circos to a moduleList
#'
#' @description Display a chord module using a data matrix.
#'
#' @param modulename The name of the new module.
#'
#' @param innerRadius The inner radius for chord circle
#' @param outerRadius The outer radius for chord circle
#' @param fillOpacity The opacity for filling color.
#' @param fillStrokeWidth The stroke width for chord.
#' @param padding The pad of chord
#' @param autoFillColor Whether auto assign color for chord
#' @param fillColor If not, manually assign color for chord
#' @param fillStrokeColor The color for stroke
#' @param outerARC Whether display outer arc
#' @param outerARCAutoColor If true, whether auto assign color for arc
#' @param outerARCColor The manullay assigned color for arc
#' @param outerARCStrokeColor The stroke color for arc
#' @param outerARCText Whether display text for arc or not
#' @param data A matrix-list of chord value with relationship details.
#'
#' @param ... Ignored
#'
#' @return The module tracks for chord modules of NG-Circos.
#'
#' @examples
#'
#' chordData<-chordExample
#' Circos(CircosChord('CHORD', data = chordData,innerRadius= 210,outerRadius= 211,fillOpacity=0.67,
#' strokeColor="black",strokeWidth= "1px",outerARCText=FALSE),genome=list("C.CK" = 189.51,"C.NPK"=188,
#' "GC.CK"=186.11, "GC.NPK"=191.51,"Alphaproteobacteria"=70.16,"Betaproteobacteria"=23.51,
#' "Gammaproteobacteria"=25.51, "Deltaproteobacteria"=23.28,"Acidobacteria"=53.62,
#' "Actinobacteria"=72.33, "Bacteroidetes"=22.41, "Chloroflexi"=15.08,"Firmicutes"=10.72,
#' "Gemmatimonadetes"=26.37, "Planctomycetes"=19.26,"Thaumarchaeota"=6.15, "Verrucomicrobia"=8.3,
#' "Ascomycota"=159.41, "Basidiomycota"=79.73,"Zygomycota"=139.29 ),outerRadius = 217, 
#' genomeLabelDisplay = FALSE)
#'
#' @export
CircosChord <- function(modulename, innerRadius = 237, outerRadius = 238, fillOpacity = 0.67, fillStrokeWidth = 1,
                               padding = 0.06, autoFillColor = TRUE, fillColor = c("#B8B8B8"), fillStrokeColor = c("black"),
                               outerARC = TRUE, outerARCAutoColor = TRUE, outerARCColor = c("red"),
                               outerARCStrokeColor = c("black"), outerARCText = TRUE, data, ...){

  module1 = paste("CHORD", modulename, sep="_")
  module2 = list(CHORDinnerRadius = innerRadius, CHORDouterRadius = outerRadius, CHORDFillOpacity = fillOpacity,
                CHORDFillStrokeWidth = fillStrokeWidth, CHORDPadding = padding, CHORDAutoFillColor = autoFillColor,
                CHORDFillColor = fillColor, CHORDFillStrokeColor = fillStrokeColor, CHORDouterARC = outerARC,
                CHORDouterARCAutoColor = outerARCAutoColor, CHORDouterARCColor = outerARCColor,
                CHORDouterARCStrokeColor = outerARCStrokeColor, CHORDouterARCText = outerARCText)


  module3 = list(colnames(data))
  tmp<-list(as.numeric(unname(data[1,])))
  for(i in 2:nrow(data)){
    tmp<-c(tmp,list(as.numeric(unname(data[i,]))))
  }
  module3 = c(module3,list(tmp))

  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Example data of chord plot of NG-Circos
#' @description The data is in matrix with column names. The order and number is same as column, representing the same items
#'
#' @format A data frame in which each value represents the relationship from a column to a row:
#' \describe{
#'   \item{C.CK}{Genome 1, the name for each arc}
#'   \item{C.NPK}{Genome 2, the name for each arc}
#'   \item{GC.CK}{Genome 2, the name for each arc}
#'   \item{GC.NPK}{Genome 2, the name for each arc}
#'   \item{Alphaproteobacteria}{Genome 2, the name for each arc}
#'   \item{Betaproteobacteria}{Genome 2, the name for each arc}
#'   \item{Gammaproteobacteria}{Genome 2, the name for each arc}
#'   \item{Deltaproteobacteria}{Genome 8, the name for each arc}
#'   \item{Acidobacteria}{Genome 9, the name for each arc}
#'   \item{Actinobacteria}{Genome 10, the name for each arc}
#'   \item{Bacteroidetes}{Genome 11, the name for each arc}
#'   \item{Chloroflexi}{Genome 12, the name for each arc}
#'   \item{Firmicutes}{Genome 13, the name for each arc}
#'   \item{Gemmatimonadetes}{Genome 14, the name for each arc}
#'   \item{Planctomycetes}{Genome 15, the name for each arc}
#'   \item{Thaumarchaeota}{Genome 16, the name for each arc}
#'   \item{Verrucomicrobia}{Genome 17, the name for each arc}
#'   \item{Ascomycota}{Genome 18, the name for each arc}
#'   \item{Basidiomycota}{Genome 19, the name for each arc}
#'   \item{Zygomycota}{Genome 20, the name for each arc}
#' }
"chordExample"

#' @title Create a CHORD module of circosJS to a moduleList
#'
#' @description Display a chord module using a data path. chord.p meaens chord plot based on path.
#'
#' @param modulename The name of the new module.
#'
#' @param radius The radius for chord circle.
#' @param opacity The opacity for chord.
#' @param color The color for chord
#' @param data A list of chord value with relationship details, details could be found on chord.pExample.
#'
#' @param ... Ignored
#'
#' @return The module tracks for chord modules of circosJS.
#'
#' @examples
#'
#' chord.pData<-chord.pExample
#' Circos()
#'
#' @export
CircosChord.p <- function(modulename, radius = 216, opacity = 0.67, color = "#B8B8B8", data, ...){
  
  module1 = paste("CHORD.p", modulename, sep="_")
  module2 = list(radius = radius, opacity = opacity, color = color)
  
  module3 = unname(alply(data, 1, as.list))
  
  module = CircosModuleList() + list(list(module1, module3, module2))
  return(module)
}

#' @title Example data of chord plot of circosJS
#' @description The data is in matrix with column names
#'
#' @format A data frame in which each row represents the relationship from one genome position(source) to 
#' another one(target):
#' \describe{
#'   \item{source_chr}{chromosome name of source}
#'   \item{source_start}{start position of source}
#'   \item{source_end}{end position of source}
#'   \item{target_chr}{chromosome name of target}
#'   \item{target_start}{start position of target}
#'   \item{target_end}{end position of target}
#' }
"chord.pExample"


#' @title Create a HISTOGRAM module to a moduleList
#'
#' @description Display a multi-layer histogram in circos
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of this module in compare module
#' @param maxRadius,minRadius Where the module should begin and end
#' @param ValueAxisManualScale Whether manually control the scale of value
#' @param ValueAxisMaxScale,ValueAxisMinScale The max and min scale value for manually control
#' @param fillColor The color for histgram.
#' @param animationDisplay Whether display animation
#' @param animationTime,animationDelay The time and delay for animation
#' @param data A list of value with details including chr, start, end, name, link, value and html. Details can be found on document.
#'
#' @param ... Ignored
#'
#' @return The module tracks for histogram modules.
#'
#' @examples
#'
#' histogramData<-histogramExample
#' Circos(CircosHistogram('HISTOGRAM01', data = histogramData,fillColor= "#ff7f0e",maxRadius = 210,
#' minRadius = 175),genome=list("2L"=23011544,"2R"=21146708,"3L"=24543557,"3R"= 27905053,
#' "X"=22422827,"4"=1351857),
#' outerRadius = 220)
#'
#' @export
CircosHistogram <- function(modulename, compareGroup = 1, maxRadius = 108, minRadius = 95,
                                   ValueAxisManualScale = FALSE, ValueAxisMaxScale = 10, ValueAxisMinScale = 0,
                                   fillColor = "red", animationDisplay = FALSE, animationTime = 2000,
                                   animationDelay = 20, data, ...){

  module1 = paste("HISTOGRAM", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, maxRadius = maxRadius, minRadius = minRadius,
                ValueAxisManualScale = ValueAxisManualScale, ValueAxisMaxScale = ValueAxisMaxScale,
                ValueAxisMinScale = ValueAxisMinScale, histogramFillColor = fillColor,
                HISTOGRAMAnimationDisplay = animationDisplay, HISTOGRAMAnimationTime = animationTime,
                HISTOGRAMAnimationDelay = animationDelay)

  module3 = unname(alply(data, 1, as.list))

  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Histogram plot example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 7 columns:
#' \describe{
#'   \item{chr}{chromosome}
#'   \item{start}{start position}
#'   \item{end}{end position}
#'   \item{name}{name for description}
#'   \item{link}{hyperlink}
#'   \item{value}{value}
#'   \item{html}{The external html language}
#' }
"histogramExample"

#' @title Create a LINE module to a moduleList
#'
#' @description Display a multi-layer line plot in circos
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of this module in compare module
#' @param maxRadius,minRadius Where the module should begin and end
#' @param ValueAxisManualScale Whether manually control the scale of value
#' @param ValueAxisMaxScale,ValueAxisMinScale The max and min scale value for manually control
#' @param color Color for line
#' @param width Width for line
#' @param type Type for line, could be linear, cardinal, basis and monotone
#' @param animationDisplay Whether display animation
#' @param animationDirection The direction of animation, could be S2E(start to end) or E2S(end to start)
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#' @param data A list of value with details including chr, pos, des, value and html. Details can be found on document.
#'
#' @param ... Ignored
#'
#' @return The module tracks for line modules.
#'
#' @examples
#'
#' lineData<-lineExample
#' Circos(CircosLine('LINE01', data = lineData,maxRadius=200,minRadius=150,color= "#ff0031")+
#' CircosBackground('BG01',minRadius = 205,maxRadius = 150))
#'
#' @export
CircosLine <- function(modulename, compareGroup = 1, maxRadius = 108, minRadius = 95,
                                   ValueAxisManualScale = FALSE, ValueAxisMaxScale = 10, ValueAxisMinScale = 0,
                                   color = "red", width = 2, type = "cardinal",animationDisplay = FALSE,
                                   animationDirection = "S2E", animationTime = 2000,
                                   animationDelay = 20, animationType = "bounce", data, ...){

  module1 = paste("LINE", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, maxRadius = maxRadius, minRadius = minRadius,
                ValueAxisManualScale = ValueAxisManualScale, ValueAxisMaxScale = ValueAxisMaxScale,
                ValueAxisMinScale = ValueAxisMinScale, LineColor = color, LineWidth = width, LineType = type,
                LINEAnimationDisplay = animationDisplay, LINEAnimationDirection = animationDirection,
                LINEAnimationTime = animationTime, LINEAnimationDelay = animationDelay,
                LINEAnimationType = animationType)

  module3 = unname(alply(data, 1, as.list))

  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Line plot example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 5 columns:
#' \describe{
#'   \item{chr}{chromosome}
#'   \item{pos}{position}
#'   \item{des}{description}
#'   \item{value}{value}
#'   \item{html}{The external html language}
#' }
"lineExample"

#' @title Create a WIG module to a moduleList
#'
#' @description Display a multi-layer line plot in circos
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of this module in compare module
#' @param maxRadius,minRadius Where the module should begin and end
#' @param direction The direction of plot, either inside or outside
#' @param ValueAxisManualScale Whether manually control the scale of value
#' @param ValueAxisMaxScale,ValueAxisMinScale The max and min scale value for manually control
#' @param color Color for plot
#' @param opacity Opacity for plot
#' @param strokeColor The color for stroke
#' @param strokeWidth The width for stroke
#' @param strokeType Line type for stroke, could be linear, cardinal, basis and monotone
#' @param animationDisplay Whether display animation
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#' @param data A list of value with details including chr, pos, des, value and html. Details can be found on document.
#'
#' @param ... Ignored
#'
#' @return The module tracks for wig modules.
#'
#' @examples
#'
#' wigData<-wigExample
#' Circos(CircosWig('WIG01', data = wigData, maxRadius= 200,minRadius= 150,strokeColor= "darkblue",
#' color= "lightblue",strokeType= "cardinal")+CircosBackground('BG01',minRadius = 205,maxRadius = 150)
#' ,genome=list("chr8"=1000),outerRadius = 220)
#'
#' @export
CircosWig <- function(modulename, compareGroup = 1, maxRadius = 108, minRadius = 95, direction = "out",
                             ValueAxisManualScale = FALSE, ValueAxisMaxScale = 10, ValueAxisMinScale = 0,
                             color = "red", opacity = 1, strokeColor = "black", strokeWidth = 1,
                             strokeType = "cardinal",animationDisplay = FALSE, animationTime = 2000,
                             animationDelay = 20, animationType = "bounce", data, ...){

  module1 = paste("WIG", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, maxRadius = maxRadius, minRadius = minRadius, direction = direction,
                ValueAxisManualScale = ValueAxisManualScale, ValueAxisMaxScale = ValueAxisMaxScale,
                ValueAxisMinScale = ValueAxisMinScale, WIGColor = color, WIGOpacity = opacity,
                WIGStrokeColor = strokeColor, WIGStrokeWidth = strokeWidth, WIGStrokeType = strokeType,
                WIGAnimationDisplay = animationDisplay, WIGAnimationTime = animationTime,
                WIGAnimationDelay = animationDelay, WIGAnimationType = animationType)

  module3 = unname(alply(data, 1, as.list))

  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Wig plot example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 5 columns:
#' \describe{
#'   \item{chr}{chromosome}
#'   \item{pos}{position}
#'   \item{des}{description}
#'   \item{value}{value}
#'   \item{html}{The external html language}
#' }
"wigExample"

#' @title Create a SCATTER module to a moduleList
#'
#' @description Display a point plot in circos
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of this module in compare module
#' @param radius Radius of scatter circle
#' @param innerPointType,outerPointType The type for inner and outer point, could be circle or rect
#' @param innerCircleSize,outerCircleSize If circle, inner and outer circle size
#' @param innerCircleColor,outerCircleColor If circle, inner and outer circle color
#' @param outerCircleOpacity If circle, the opacity for outer circle
#' @param innerrectWidth,innerrectHeight If rect, inner width and height
#' @param outerrectWidth,outerrectHeight If rect, inner width and height
#' @param random_data Scatter position fluctuation
#' @param animationDisplay Whether display animation
#' @param animationInitialPositionX,animationInitialPositionY The initial coordinates for animation
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#' @param data A list of value with details including chr, start, end, name, des, link and html.
#'             Details can be found on document.
#'
#' @param ... Ignored
#' 
#' @return The module tracks for scatter modules.
#'
#' @examples
#'
#' scatterData<-scatterExample
#' Circos(CircosScatter('SCATTER01', data = scatterData,radius=180,innerCircleColor= "#3d6390",
#' outerCircleColor= "#99cafe",random_data= 40))
#'
#' @export
CircosScatter <- function(modulename, compareGroup = 1, radius = 140, innerCircleSize = 1,
                                 outerCircleSize = 5, innerCircleColor = "#F26223", outerCircleColor = "#F26223",
                                 innerPointType = "circle", outerPointType = "circle", innerrectWidth = 2,
                                 innerrectHeight = 2, outerrectWidth = 2, outerrectHeight = 2,
                                 outerCircleOpacity = 1, random_data = 0, animationDisplay = FALSE,
                                 animationInitialPositionX = 0, animationInitialPositionY = 0, animationTime = 2000,
                                 animationDelay = 20, animationType = "bounce", data, ...){

  module1 = paste("SCATTER", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, SCATTERRadius = radius, innerCircleSize = innerCircleSize,
                outerCircleSize = outerCircleSize, innerCircleColor = innerCircleColor,
                outerCircleColor = outerCircleColor, innerPointType = innerPointType,
                outerPointType = outerPointType, innerrectWidth = innerrectWidth,
                innerrectHeight = innerrectHeight, outerrectWidth = outerrectWidth, outerrectHeight = outerrectHeight,
                outerCircleOpacity = outerCircleOpacity, random_data = random_data,
                SCATTERAnimationDisplay = animationDisplay, SCATTERAnimationInitialPositionX = animationInitialPositionX,
                SCATTERAnimationInitialPositionY = animationInitialPositionY, SCATTERAnimationTime = animationTime,
                SCATTERAnimationDelay = animationDelay, SCATTERAnimationType = animationType)

  module3 = unname(alply(data, 1, as.list))

  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Scatter plot example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 7 columns:
#' \describe{
#'   \item{chr}{chromosome}
#'   \item{start}{start position}
#'   \item{end}{end position}
#'   \item{name}{name for scatter}
#'   \item{des}{description}
#'   \item{link}{hyperlink}
#'   \item{html}{The external html language}
#' }
"scatterExample"

#' @title Create a ARC module to a moduleList
#'
#' @description Display the CNV without value, Gene domain, Chromosome band in the visualization
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of this module in compare module
#' @param innerRadius,outerRadius Where the module should begin and end
#' @param opacity The opacity for arc
#' @param animationDisplay Whether display animation
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#' @param data A list of arc with details including chr, start, end, color, des, link and html.
#'             Details can be found on document.
#'
#' @param ... Ignored
#' 
#' @return The module tracks for arc modules.
#'
#' @examples
#' arcData<-arcExample
#' Circos(CircosArc('Arc01', outerRadius = 212, innerRadius = 224, data=arcData),
#'  genome=list("EGFR"=1211),outerRadius = 220,genomeFillColor = c("grey"))
#'
#' @export
CircosArc <- function(modulename, compareGroup = 1, outerRadius = 150, innerRadius = 130, opacity = 1,
                              animationDisplay = FALSE,animationTime = 2000, animationDelay = 20,
                              animationType = "bounce", data, ...){
  module1 = paste("ARC", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, outerRadius = outerRadius, innerRadius = innerRadius,
                ARCOpacity = opacity, ARCAnimationDisplay = animationDisplay, ARCAnimationTime = animationTime,
                ARCAnimationDelay = animationDelay, ARCAnimationType = animationType)
  module3 = unname(alply(data, 1, as.list))
  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Arc plot example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 7 columns:
#' \describe{
#'   \item{chr}{chromosome}
#'   \item{start}{start position}
#'   \item{end}{end position}
#'   \item{color}{color}
#'   \item{des}{description}
#'   \item{link}{hyperlink}
#'   \item{html}{The external html language}
#' }
"arcExample"


#' @title Create a LOLLIPOP module to a moduleList
#'
#' @description Display a lollipop plot in the visualization
#'
#' @param modulename The name of the new module.
#'
#' @param compareGroup The group number of this module in compare module
#' @param fillColor Filling color for lollipop
#' @param secondColor Second filling color for heterogeneous lollipop
#' @param pointType The type for lollipop, could be circle, rect and diamond
#' @param circleSize If circle, the size for lollipop
#' @param diamondWidth,diamondHeight If diamond, the width and height for lollipop
#' @param rectWidth,rectHeight If rect, the width and height for lollipop
#' @param stroke Whether display the stroke for lollipop
#' @param strokeColor,strokeWidth The color and width for stroke
#' @param lineAutoHeight Whether auto assign the height for each lollipop
#' @param lineAutoMaximumHeightZoomRate If auto assign, the zoom rate for each lollipop
#' @param lineHeightRate If manually assign, the rate of lollipop compared to real value
#' @param lineWidth,lineColor The width and color for the line of lollipop
#' @param realStart The real start position for data in genome.
#' @param ValueAxisManualScale Whether manually control the scale of value
#' @param ValueAxisMaxScale,ValueAxisMinScale The max and min scale value for manually control
#' @param animationDisplay Whether display animation
#' @param animationTime,animationDelay,animationType The time, delay and display type for animation
#' @param data A list of lollipop value with details including protein, chr, pos, strand, CancerTypeNumber, color, link,
#'             Consequence, AA_pos, AA_change, type, link and html.
#'             Details can be found on document.
#'
#' @param ... Ignored
#'
#' @return The module tracks for lollipop modules.
#'
#' @examples
#' lollipopData<-lollipopExample
#' arcData<-arcExample
#' Circos(CircosLollipop('Lollipop01', data=lollipopData, fillColor="#9400D3",
#' circleSize= 6, strokeColor= "#999999", strokeWidth= "1px", animationDisplay=TRUE, lineWidth= 2,
#' realStart= 101219350)+CircosArc('Arc01', outerRadius = 212, innerRadius = 224, data=arcData),
#'  genome=list("EGFR"=1211),outerRadius = 220,genomeFillColor = c("grey"))
#'
#' @export
CircosLollipop <- function(modulename, compareGroup = 1, fillColor = "#9400D3", secondColor = "#FFFFFF",
                                   pointType = "circle", circleSize = 2, diamondWidth = 10, diamondHeight = 5,
                                   rectWidth = 2, rectHeight = 2, stroke = TRUE, strokeColor = "#000000",
                                   strokeWidth = 0.5, lineAutoHeight = TRUE, lineAutoMaximumHeightZoomRate = 1,
                                   lineHeightRate = 0.75, lineWidth = 2, lineColor = "#000000", realStart = 0,
                                   ValueAxisManualScale = FALSE, ValueAxisMaxScale = 10,
                                   ValueAxisMinScale = 0, animationDisplay = FALSE, animationTime = 2000,
                                   animationDelay = 20, animationType = "bounce", data, ...){
  module1 = paste("LOLLIPOP", modulename, sep="_")
  module2 = list(compareGroup = compareGroup, LOLLIPOPFillColor = fillColor, LOLLIPOPSecondColor = secondColor,
                PointType = pointType, circleSize = circleSize, diamondWidth = diamondWidth,
                diamondHeight = diamondHeight, rectWidth = rectWidth, rectHeight = rectHeight,
                stroke = stroke, strokeColor = strokeColor, strokeWidth = strokeWidth, lineAutoHeight = lineAutoHeight,
                lineAutoMaximumHeightZoomRate = lineAutoMaximumHeightZoomRate, lineHeightRate = lineHeightRate,
                ValueAxisManualScale = ValueAxisManualScale, ValueAxisMaxScale = ValueAxisMaxScale,
                ValueAxisMinScale = ValueAxisMinScale, LOLLIPOPAnimationDisplay = animationDisplay,
                LOLLIPOPAnimationTime = animationTime, LOLLIPOPAnimationDelay = animationDelay,
                LOLLIPOPAnimationType = animationType, LOLLIPOPLineWidth = lineWidth,
                LOLLIPOPLineColor = lineColor, realStart = 0)
  module3 = unname(alply(data, 1, as.list))
  module = CircosModuleList() + list(list(module1, module2, module3))
  return(module)
}

#' @title Lollipop plot example data
#' @description The data is in matrix with column names
#'
#' @format A data frame with 12 columns:
#' \describe{
#'   \item{protein}{protein name}
#'   \item{chr}{chromosome}
#'   \item{pos}{position}
#'   \item{strand}{strand, - or +}
#'   \item{CancerTypeNumber}{Cancer type number}
#'   \item{color}{color}
#'   \item{link}{hyperlink}
#'   \item{Consequence}{consequence}
#'   \item{AA_pos}{AA_pos}
#'   \item{AA_change}{AA_change}
#'   \item{type}{type for mutation,Hetero or Homo}
#'   \item{html}{The external html language}
#' }
"lollipopExample"


#' @title Create a list of modules
#'
#' @description This allows the use of the '+' and '-' operator on these lists
#'
#' @name CircosModuleList
#'
#' @param x The moduleList on which other modules should be added or removed.
#' @param ... The modules to add (as moduleLists) or to remove (as module names).
#'
#' @return The list of all tracks of modules.
#'
#' @export
CircosModuleList <- function(){
  x = list()
  class(x) <- c("CircosModuleList")
  return(x)
}

#' @rdname CircosModuleList
#' @export
"+.CircosModuleList" <- function(x,...) {
  x <- append(x,...)
  if(class(x) != "CircosModuleList"){
    class(x) <- c("CircosModuleList")
  }
  return(x)
}

#' @rdname CircosModuleList
#' @export
"-.CircosModuleList" <- function(x,...) {
  indicesToDelete = list()
  for (i in 1:length(x)){
    if(paste(strsplit(x[[i]][[1]], '_')[[1]][-1], collapse = "_") %in% ...){
      indicesToDelete = append(indicesToDelete, i)
    }
  }
  y <- x
  y[unlist(indicesToDelete)] <- NULL
  return(y)
}

.CircosColorCheck <- function(colVar, colLength, varName = "Color") {
  # If genomeFillColor is a string, create corresponding palette
  colorError = paste0("\'", varName,
                      "\' parameter should be either a vector of chromosome colors or the name of a RColorBrewer brewer.")
  if(class(colVar) == "character"){
    if(all(colVar %in% rownames(RColorBrewer::brewer.pal.info))&(length(colVar) == 1)) { # RColorBrewer's brewer
      colVar = grDevices::colorRampPalette(RColorBrewer::brewer.pal(8, colVar))(colLength)
      # colVar =list(colVar)
    }else if(length(colVar) == colLength){
      return(colVar)
    }else{
      print("Warning! The genomeFillColor should either has same length of genome or be a name of RColorBrewer brewer")
      colVar = grDevices::colorRampPalette(RColorBrewer::brewer.pal(8, "Spectral"))(colLength)
    }
  }
  else{
    stop(colorError)
  }
  return(colVar)
}
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interacCircos
The Visualization of Interactive Circos Plot

R/interacCircos.R
In interacCircos: The Visualization of Interactive Circos Plot

Documented in Circos CircosArc CircosAuxLine CircosBackground CircosBubble CircosChord CircosChord.p CircosCnv CircosGene CircosHeatmap CircosHistogram CircosLegend CircosLine CircosLink CircosLollipop CircosModuleList CircosOutput CircosScatter CircosSnp CircosText CircosWig renderCircos

Try the interacCircos package in your browser

R Package Documentation

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interacCircos The Visualization of Interactive Circos Plot

R/interacCircos.R In interacCircos: The Visualization of Interactive Circos Plot

Documented in Circos CircosArc CircosAuxLine CircosBackground CircosBubble CircosChord CircosChord.p CircosCnv CircosGene CircosHeatmap CircosHistogram CircosLegend CircosLine CircosLink CircosLollipop CircosModuleList CircosOutput CircosScatter CircosSnp CircosText CircosWig renderCircos

Try the interacCircos package in your browser

R Package Documentation

Browse R Packages

We want your feedback!

interacCircos
The Visualization of Interactive Circos Plot

R/interacCircos.R
In interacCircos: The Visualization of Interactive Circos Plot
