CircosLink: Create a LINK module to a moduleList

In interacCircos: The Visualization of Interactive Circos Plot

Description

Link two specific region in genome.

Usage

CircosLink(
  modulename,
  compareGroup = 1,
  radius = 108,
  fillColor = "red",
  width = 3,
  type = "Q",
  displayLinkAxis = TRUE,
  axisColor = "#B8B8B8",
  axisWidth = 0.5,
  axisPad = 3,
  displayLinkLabel = TRUE,
  labelColor = "red",
  labelSize = 13,
  labelPad = 8,
  animationDisplay = FALSE,
  animationDirection = "1to2",
  animationTime = 2000,
  animationDelay = 20,
  animationType = "bounce",
  data,
  ...
)

Arguments

modulename	The name of the new module.
compareGroup	The group number of thic module in compare module
radius	Radius of link circle.
fillColor	Color for link.
width	Width for link.
type	Type of link, could be Q/S/T
displayLinkAxis	Whether display axis for link or not
axisColor	The color for axis
axisWidth	The width for axis
axisPad	The pad for axis
displayLinkLabel	Whether display label for link or not
labelColor	The color for label
labelSize	The size for label
labelPad	The pad for label
animationDisplay	Whether display animation
animationDirection	The direction of link animation, could be 1to2 or 2to1
animationTime, animationDelay, animationType	The time, delay and display type for animation
data	A list of link with details including g1chr, g1start, g1end, g2chr, g2start, g2end, g1name, g2name, fusion, link and html. Details can be found on document.
...	Ignored

Value

The module tracks for link modules.

Examples

linkData<-linkExample
Circos(CircosLink('LINK', data = linkData,LinkRadius= 140,fillColor= "#9e9ac6",width= 2,
axisPad= 3,labelPad=8,animationDisplay=TRUE,animationDirection="1to2", animationType= "linear" ))

interacCircos documentation built on Jan. 21, 2021, 5:10 p.m.