CircosBubble: Create a BUBBLE module to a moduleList

In interacCircos: The Visualization of Interactive Circos Plot

Description

A bubble plot displayed in the visualization

Usage

CircosBubble(
  modulename,
  compareGroup = 1,
  maxRadius = 200,
  minRadius = 50,
  blockStroke = TRUE,
  blockStrokeColor = "black",
  blockStrokeWidth = 1,
  blockFill = FALSE,
  blockFillColor = "white",
  bubbleMaxSize = 5,
  bubbleMinSize = 2,
  minColor = "red",
  maxColor = "green",
  ValueAxisManualScale = FALSE,
  ValueAxisMaxScale = 10,
  ValueAxisMinScale = 0,
  totalLayer = 1,
  animationDisplay = FALSE,
  animationTime = 2000,
  animationDelay = 20,
  animationType = "bounce",
  data,
  ...
)

Arguments

modulename	The name of the new module.
compareGroup	The group number of this module in compare module
maxRadius, minRadius	Where the module should begin and end.
blockStroke	Whether display the stroke between each bubble block
blockStrokeColor	Stroke color for block
blockStrokeWidth	Stroke width for block
blockFill	Whether fill a block or not
blockFillColor	The color for filling the block
bubbleMaxSize	The max size for bubble
bubbleMinSize	The min size for bubble
minColor	The color the bubble with min value
maxColor	The color the bubble with max value
ValueAxisManualScale	Whether manually control the scale of value
ValueAxisMaxScale, ValueAxisMinScale	The max and min scale value for manually control
totalLayer	The color and width for stroke
animationDisplay	Whether display animation
animationTime, animationDelay, animationType	The time, delay and display type for animation
data	A list of value in bubble plot with details including chr, start, end, value, name, layer, color and html. Details can be found on document.
...	Ignored

Value

The module tracks for bubble modules.

Examples

bubbleData<-bubbleExample
Circos(CircosBubble('Bubble01', maxRadius = 230, minRadius = 170, data=bubbleData, 
blockStroke = TRUE, bubbleMaxSize =10, bubbleMinSize = 2, maxColor = "red", minColor = "yellow",
totalLayer =3, animationDisplay = TRUE, animationType="linear"),
genome = list("2L"=23011544,"2R"=21146708,"3L"=24543557,"3R"= 27905053,"X"=22422827,"4"=1351857),
BUBBLEMouseOverDisplay =TRUE,innerRadius = 236)

interacCircos documentation built on Jan. 21, 2021, 5:10 p.m.