API for mlgt
Multi-Locus Geno-Typing

Global functions
alignReport Man page Source code
callGenotypes Man page Source code
callGenotypes.custom Source code
callGenotypes.default Man page Source code
callGenotypes.mlgtResult Man page
combineMlgtResults Man page Source code
copyIfSpaces Source code
createKnownAlleleList Man page Source code
dumpVariantMap.mlgtResult Man page Source code
dumpVariants Man page Source code
errorCorrect Man page
errorCorrect,missing,list-method Man page
errorCorrect,mlgtResult,missing-method Man page
errorCorrect.alignment Source code
errorCorrect.mlgtResult Source code
genotypeCall Man page
getSubSeqsTable Man page Source code
getTopBlastHits Man page Source code
inspectBlastResults Man page Source code
makeBigParamList Source code
makeVarAlleleBlastMap Source code
makeVarAlleleMap Source code
makeVarAlleleMap.list Source code
mergeMlgtResults.complex Source code
mergeMlgtResults.simple Source code
mlgt Man page Source code
mlgt,mlgtDesign-method Man page
mlgt-package Man page
mlgt.mlgtDesign Man page Source code
mlgtDesign Man page
mlgtResult Man page
my.mlgt.Result Man page
plotGenotypeEvidence Man page
plotGenotypeEvidence,genotypeCall,missing,character-method Man page
plotGenotypeEvidence,genotypeCall,missing,missing-method Man page
plotGenotypeEvidence,genoytpeCall,missing,character-method Man page
plotGenotypeEvidence,genoytpeCall,missing,missing-method Man page
plotGenotypeEvidence,missing,list,character-method Man page
plotGenotypeEvidence.genotypeCall Man page Source code
plotGenotypeEvidence.genotypeCall.file Man page Source code
plotGenotypeEvidence.list Man page Source code
prepareMlgtRun Man page Source code
prepareMlgtRun,missing,character,character,character,list,list,l Man page
prepareMlgtRun,mlgtDesign,missing,missing,missing,missing,missin Man page
prepareMlgtRun.listDesign Source code
prepareMlgtRun.listDesign,prepareMlgtRun.mlgtDesign Man page
prepareMlgtRun.mlgtDesign Source code
printBlastResultGraphs Man page Source code
quoteIfSpaces Source code
setUpBlastDb Source code
stripGapColumns Source code
variantMap Man page
vectorOrRepeat Source code
writeGenotypeCallsToFile Man page
writeGenotypeCallsToFile,list,missing-method Man page
writeGenotypeCallsToFile,missing,genotypeCall-method Man page
writeGenotypeCallsToFile.genotypeCall Source code
writeGenotypeCallsToFile.list Source code
writeGenotypeCallsToFile.list,writeGenotypeCallsToFile.genotypeC Man page
mlgt documentation built on May 29, 2017, 11:35 a.m.