writeGenotypeCallsToFile-methods: Write genotype calls to file

In mlgt: Multi-Locus Geno-Typing

Description

A genotype call table or a list of tables can be written to tab-delimited file(s).

Arguments

callList	A list of genotypes calls.
genotypeCall	Alternatively, supply a single table of genotype calls
filePrefix	A prefix to add to the start of each file name. Useful to distinguish sets of genotype call results from same run.
file	The file to write to. If none specified, function will attempt to make one. Ignored if singleFile = TRUE.
singleFile	FALSE/TRUE whether to concatenate results from a list of genotypeCalls
writeParams	List call parameter values at top of file? Beware using this option when singleFile = TRUE
appendValue	Used internally to concatenate results.

Details

This function is quite flexible and can output a single table of concatenated results or a series of individual files. Call parameters can be included above each table but be careful doing this when singleFile=TRUE

Value

Writes tables in the current working directory.

Examples

## Not run: 
data("mlgtResult", package="mlgt")
my.genoytpes <- callGenotypes(my.mlgt.Result)
writeGenotypeCallsToFile(my.genotypes)

## End(Not run)

mlgt documentation built on May 1, 2019, 8:45 p.m.