An S4 class containing a table and parameter values
returned by callGenotypes
In which project does this run belong
Which run was this. An identifier for the sequence run
Which marker was this.
A data frame with variant counts, statistics, genotype calls and, optionally, allele names.
Which method was used to call genotypes
a named list containing parameter values used in the call
TRUE/FALSE whether an attempt was made to map the variants to a db on known alleles.
A list of objects of class
variantMap
. Contains all variants returned
by mlgt
callGenotypes
,
writeGenotypeCallsToFile
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