mlgt-package: mlgt: Multi-locus geno-typing
In mlgt: Multi-Locus Geno-Typing
Description
Details
References
Description
Package: mlgt
Type: Package
Version: 0.16
Date: 2012-03-27
Author:
Dave T. Gerrard <david.gerrard@manchester.ac.uk>
License: GPL (>= 2)
LazyLoad: yes
Details
mlgt sorts a batch of sequence by barcode and identity to
templates. It makes use of external applications BLAST
and MUSCLE. Genotypes are called and alleles can be
compared to a reference list of sequences. More
information about each function can be found in its help
documentation.
Some text
The main functions are: prepareMlgtRun,
mlgt, callGenotypes,
createKnownAlleleList,
...
References
BLAST - Altschul, S. F., W. Gish, W. Miller, E. W. Myers,
and D. J. Lipman (1990). Basic local alignment search
tool. Journal of molecular biology 215 (3), 403-410.
MUSCLE - Robert C. Edgar (2004) MUSCLE: multiple sequence
alignment with high accuracy and high throughput. Nucleic
Acids Research 32(5), 1792-97.
IMGT/HLA database - Robinson J, Mistry K, McWilliam H,
Lopez R, Parham P, Marsh SGE (2011) The IMGT/HLA
Database. Nucleic Acids Research 39 Suppl 1:D1171-6
mlgt documentation built on May 1, 2019, 8:45 p.m.
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Description Details References
Description
| Package: | mlgt |
| Type: | Package |
| Version: | 0.16 |
| Date: | 2012-03-27 |
| Author: | Dave T. Gerrard <david.gerrard@manchester.ac.uk> |
| License: | GPL (>= 2) |
| LazyLoad: | yes |
Details
mlgt sorts a batch of sequence by barcode and identity to templates. It makes use of external applications BLAST and MUSCLE. Genotypes are called and alleles can be compared to a reference list of sequences. More information about each function can be found in its help documentation.
Some text
The main functions are: prepareMlgtRun,
mlgt, callGenotypes,
createKnownAlleleList,
...
References
BLAST - Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman (1990). Basic local alignment search tool. Journal of molecular biology 215 (3), 403-410.
MUSCLE - Robert C. Edgar (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32(5), 1792-97.
IMGT/HLA database - Robinson J, Mistry K, McWilliam H, Lopez R, Parham P, Marsh SGE (2011) The IMGT/HLA Database. Nucleic Acids Research 39 Suppl 1:D1171-6
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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