dumpVariantMap.mlgtResult: Dump variants as fasta

In mlgt: Multi-Locus Geno-Typing

Description

Output unique variants to one or more fasta files.

Usage

  dumpVariantMap.mlgtResult(resultObject,
    markers = names(resultObject@markers),
    file = paste(resultObject@projectName, resultObject@runName, "seqDump", sep = "."),
    singleFile = TRUE)

Arguments

resultObject	An object of class mlgtResult containing the sequence variants.
markers	For which markers do you want to output sequences.
file	An output file name. If not supplied, one is created.
singleFile	Whether to output results for all markers to a single file or to one file per marker.

Details

This is a stop-gap function while I decide how best to handle output of full sequences.

Value

Writes fasta files in the current directory.

mlgt documentation built on May 1, 2019, 8:45 p.m.