dumpVariantMap.mlgtResult: Dump variants as fasta

Description Usage Arguments Details Value

View source: R/mlgt.R

Description

Output unique variants to one or more fasta files.

Usage

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  dumpVariantMap.mlgtResult(resultObject,
    markers = names(resultObject@markers),
    file = paste(resultObject@projectName, resultObject@runName, "seqDump", sep = "."),
    singleFile = TRUE)

Arguments

resultObject

An object of class mlgtResult containing the sequence variants.

markers

For which markers do you want to output sequences.

file

An output file name. If not supplied, one is created.

singleFile

Whether to output results for all markers to a single file or to one file per marker.

Details

This is a stop-gap function while I decide how best to handle output of full sequences.

Value

Writes fasta files in the current directory.


mlgt documentation built on May 29, 2017, 11:35 a.m.