Description Arguments Details Value See Also Examples
Plot the distributions of values used in calling genotypes.
callList |
A |
genotypeCall |
A single table of genotype calls |
file |
The file to write to. |
Currently only makes sense with "custom" method. The resulting plots are
Histogram of the number of sequences assigned to each sample
Histogram of diffToVarThree parameter. Used to decide whether to make the call
Histogram of propDiffHomHet parameter. Used to distinguish HOMOZYGOTES and HETEROZYGOTES
propDiffHomHet against diffToVarThree
diffToVarThree against number of sequences
propDiffHomHet against number of sequences
Creates six plots for each marker with a genotypeCall
table. See details
.
1 2 3 4 5 6 | ## Not run:
data("mlgtResult", package="mlgt")
my.genoytpes <- callGenotypes(my.mlgt.Result)
plotGenotypeEvidence(genotypeCall=my.genotypes[["DPA1_E2"]])
## End(Not run)
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