errorCorrect-methods: Alignment error correction
In mlgt: Multi-Locus Geno-Typing
Description
Arguments
Details
Value
See Also
Description
Correct very low frequency site variants.
Arguments
mlgtResultObject
An object of class
mlgtResult
correctThreshold
The maximimum Minor Allele
Frequency (MAF) at which variants will be corrected.
Details
You may want to alter some of the sequences if you
believe that sequences at very low frequency (within the
set of sequences from a marker/sample pair) represent
sequencing errors. errorCorrect() is implemented
as an additional step after running mlgt,
however, it is recommended to include error correction
within mlgt using the errorCorrect=TRUE
option. Using alignReport beforehand may
help you decide whether to do this.
Value
A new mlgtResult object with errors
'corrected'
See Also
mlgt documentation built on May 1, 2019, 8:45 p.m.
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Description Arguments Details Value See Also
Description
Correct very low frequency site variants.
Arguments
mlgtResultObject |
An object of class
|
correctThreshold |
The maximimum Minor Allele Frequency (MAF) at which variants will be corrected. |
Details
You may want to alter some of the sequences if you
believe that sequences at very low frequency (within the
set of sequences from a marker/sample pair) represent
sequencing errors. errorCorrect() is implemented
as an additional step after running mlgt,
however, it is recommended to include error correction
within mlgt using the errorCorrect=TRUE
option. Using alignReport beforehand may
help you decide whether to do this.
Value
A new mlgtResult object with errors
'corrected'
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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