mlgtResult: An S4 class to hold results from 'mlgt'
In mlgt: Multi-Locus Geno-Typing
Description
Extends mlgtDesign
Details
- projectName
In which project does this
run belong
- runName
Which run was this. An
identifier for the sequnece run
- markers
A
list of named sequences.
- samples
A vector
of sample names
- fTags
A vector of named sequence
of MIDs used to barcode samples at the 5' end.
- rTags
A vector of named sequence of MIDs used to
barcode samples at the 3' end. May be same as
fTags
- inputFastaFile
The name of the file
containing sequences. Currently only fasta format is
supported. It is up to you to pre-filter the sequences.
- runSummaryTable
A summary table with one row per
marker
- alleleDb
A list of objects of class
variantMap. Contains all variants returned
by mlgt
- markerSampleList
A list of
tables, one table per marker giving results for each
sample/MID
See Also
mlgtDesign, prepareMlgtRun,
mlgt
mlgt documentation built on May 1, 2019, 8:45 p.m.
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Description
Extends mlgtDesign
Details
- projectName
In which project does this run belong
- runName
Which run was this. An identifier for the sequnece run
- markers
A list of named sequences.
- samples
A vector of sample names
- fTags
A vector of named sequence of MIDs used to barcode samples at the 5' end.
- rTags
A vector of named sequence of MIDs used to barcode samples at the 3' end. May be same as
fTags- inputFastaFile
The name of the file containing sequences. Currently only fasta format is supported. It is up to you to pre-filter the sequences.
- runSummaryTable
A summary table with one row per marker
- alleleDb
A list of objects of class
variantMap. Contains all variants returned bymlgt- markerSampleList
A list of tables, one table per marker giving results for each sample/MID
See Also
mlgtDesign, prepareMlgtRun,
mlgt
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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