Man pages for mlgt
Multi-Locus Geno-Typing
| alignReport | Report on alignment |
| callGenotypes | Make genotype calls |
| callGenotypes.default | Default internal methods for 'callGenotypes' |
| combineMlgtResults | Combine two or more mlgtResult objects |
| createKnownAlleleList | Create 'variantMap' object from allele alignment |
| dumpVariantMap.mlgtResult | Dump variants as fasta |
| dumpVariants | Print sequence to file |
| errorCorrect-methods | Alignment error correction |
| genotypeCall | Results from 'callGenotypes' |
| getSubSeqsTable | Align and trim sequences for marker/sample pair |
| getTopBlastHits | Return top blast hits |
| inspectBlastResults | Plot BLAST statisitics for one marker |
| mlgtDesign | An S4 class that holds information about an mlgt analysis. |
| mlgt-methods | Get variants for all markers/samples |
| mlgt-package | mlgt: Multi-locus geno-typing |
| mlgtResult | An S4 class to hold results from 'mlgt' |
| my.mlgt.Result | An example 'mlgtResult' object. |
| plotGenotypeEvidence-methods | Plot genotyping evidence |
| prepareMlgtRun-methods | Prepare to run mlgt |
| printBlastResultGraphs | Plot BLAST statistics for several markers to file |
| variantMap | An S4 class to hold all unique variants found/known for a... |
| writeGenotypeCallsToFile-methods | Write genotype calls to file |
