addWeak: Add Weak Mutation Types

Description Usage Arguments Value Note Author(s) References Examples

View source: R/addWeak.R

Description

Restore Mutation Types that were initially excluded because a low number of total counts

Usage

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addWeak(mutationTypesToAddSet, processes_I, processesStd_I, 
Wall_I, genomeErrors_I, genomesReconstructed_I)

Arguments

mutationTypesToAddSet

Set of mutations to restore

processes_I

Set of Mutational Processes

processesStd_I

Set of standard deviations of all Mutational Processes

Wall_I

Set of all W matrices previously extracted

genomeErrors_I

Set of all residuals

genomesReconstructed_I

Fitted Values according to the most likely Model

Value

Output is the final result of the deconvolution process

Note

Affiliation: Meeks Lab, Department of Urology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611 USA Software: Original MATLAB framework was described here: Cell Rep. 2013 Jan 31;3(1):246-59

Author(s)

Damiano Fantini

References

More info at: http://www.biotechworld.it/bioinf/2017/01/22/mutsignatures/

Examples

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# there are no examples for this function
message("No examples")

mutSignatures documentation built on May 30, 2017, 1:32 a.m.