Files in mutSignatures
Decipher Mutational Signatures from Somatic Mutational Catalogs
MD5
NAMESPACE
DESCRIPTION
build/vignette.rds
data/mutSigData.rda
R/s01_all_classes.R
R/s03_all_functions.R
R/s02_all_methods.R
R/s04_all_extra.R
vignettes/get_sarted_with_mutSignatures.Rmd
man/mutSigData.Rd
man/leadZeros.Rd
man/as.list-mutationSignatures-method.Rd
man/sub-mutSignExposures-numeric-ANY-ANY-method.Rd
man/attachContext.Rd
man/as.mutsign.exposures.Rd
man/mutationCounts-show.Rd
man/sortByMutations.Rd
man/getSignatureIdentifiers.Rd
man/plotSignExposures.Rd
man/cbind2.Rd
man/mutFrameworkParams-show.Rd
man/attachMutType.Rd
man/as.data.frame-mutationCounts-method.Rd
man/simplifySignatures.Rd
man/plotMutTypeProfile.Rd
man/filterOutIterations.Rd
man/importVCFfiles.Rd
man/processVCFdata.Rd
man/setMutClusterParams.Rd
man/getSampleIdentifiers.Rd
man/mutationCounts-class.Rd
man/getFwkParam.Rd
man/as.data.frame-mutationSignatures-method.Rd
man/evaluateStability.Rd
man/custom_cssls.Rd
man/as.mutation.signatures.Rd
man/getCosmicSignatures.Rd
man/countMutTypes.Rd
man/extractXvarlinkData.Rd
man/mutationSignatures-show.Rd
man/chihJenNMF.Rd
man/mutFrameworkParams-class.Rd
man/setFwkParam.Rd
man/decipherMutationalProcesses.Rd
man/prelimProcessAssess.Rd
man/as.matrix-mutationCounts-method.Rd
man/removeWeak.Rd
man/getCounts.Rd
man/addWeak.Rd
man/getMutationTypes.Rd
man/bootstrapCancerGenomes.Rd
man/sub-mutationSignatures-numeric-ANY-ANY-method.Rd
man/mutSignExposures-class.Rd
man/sub-mutationCounts-numeric-ANY-ANY-method.Rd
man/custom_fcnnls.Rd
man/removeMismatchMut.Rd
man/extractSignatures.Rd
man/mutSignExposures-show.Rd
man/mutationSignatures-class.Rd
man/as.data.frame-mutSignExposures-method.Rd
man/silhouetteMLB.Rd
man/matchSignatures.Rd
man/as.mutation.counts.Rd
man/msigPlot.Rd
man/table2df.Rd
man/filterSNV.Rd
man/deconvoluteMutCounts.Rd
man/mutSignatures-package.Rd
man/getTestRunArgs.Rd
man/alexaNMF.Rd
man/as.list-mutFrameworkParams-method.Rd
man/revCompl.Rd
man/coerceObj-methods.Rd
man/frequencize.Rd
man/resolveMutSignatures.Rd
inst/CITATION
inst/doc/get_sarted_with_mutSignatures.R
inst/doc/get_sarted_with_mutSignatures.html
inst/doc/get_sarted_with_mutSignatures.Rmd
