getTestRunArgs: Generate Arguments for Running Examples and Mock Runs.

In mutSignatures: Decipher Mutational Signatures from Somatic Mutational Catalogs

Description

This function generates objects that can be used for running the examples included in the package documentation files, as well as some simple mutSignature analyses. Note that his function is not exported.

Usage

getTestRunArgs(testN = "evaluateStability")

Arguments

testN

string, name of the function that we want to test

Details

This is an internal function.

Value

an object (typically, a list) including sample data to run analyses or to test mutSignatures functions.

Author(s)

Damiano Fantini, [e-mail]

References

More information and examples about mutational signature analysis can be found here:

1. GitHub Repo: https://github.com/dami82/mutSignatures/

2. More info and examples about the mutSignatures R library: https://www.data-pulse.com/dev_site/mutsignatures/

3. Sci Rep paper, introducing mutS: https://www.nature.com/articles/s41598-020-75062-0/

4. Oncogene paper, Mutational Signatures Operative in Bladder Cancer: https://www.nature.com/articles/s41388-017-0099-6

5. WTSI framework: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3588146/

mutSignatures documentation built on Nov. 9, 2020, 9:06 a.m.