plotMutTypeProfile: Plot Mutation Signature Profiles.
In mutSignatures: Decipher Mutational Signatures from Somatic Mutational Catalogs

Description Usage Arguments Details Value Author(s) References

Build a barplot to visualize the relative abundance of mutation counts in a mutational signature or biological sample of interest.

plotMutTypeProfile(
  mutCounts,
  mutLabs,
  freq = TRUE,
  ylim = "auto",
  ylab = "Fraction of Variants",
  xlab = "Sequence Motifs",
  xaxis_cex = 0.475,
  cols = c("#4eb3d3", "#040404", "#b30000", "#bdbdbd", "#41ab5d", "#dd3497"),
  main = "MutType Profile"
)

`mutCounts`	data.frame including mutation types counts or frequencies, such as a data.frame of mutation counts from samples, or mutation type frequencies from a mutational signature.
`mutLabs`	character vector, labels to be used for the mutation types
`freq`	logical, shall frequency be plotted rather than counts. Defaults to TRUE
`ylim`	values used for ylim. Defaults to "auto" (ylim automatically set)
`ylab`	string, used as y-axis title. Defaults to "Fraction of Variants"
`xlab`	string, used as x-axis title. Defaults to "Sequence Motifs"
`xaxis_cex`	numeric, cex value for the xaxis
`cols`	character vector, indicates the colors to be used for the bars. It typically requires 6 colors.
`main`	string, tutle of the plot. Defaults to "MutType Profile"