Description Usage Arguments Details Value Author(s) References Examples
View source: R/s03_all_functions.R
Extract Variants from data stored as XvarlinkData.
1 | extractXvarlinkData(xvarLink_data)
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xvarLink_data |
character vector, including mutation data embedded in XvarlinkData |
This function is part of the user-interface set of tools included in mutSignatures. This is an exported function.
a data.frame including mutations as well as corresponding reference nucleotides.
Damiano Fantini, damiano.fantini@gmail.com
More information and examples about mutational signature analysis can be found here:
GitHub Repo: https://github.com/dami82/mutSignatures/
More info and examples about the mutSignatures R library: https://www.data-pulse.com/dev_site/mutsignatures/
Sci Rep paper, introducing mutS: https://www.nature.com/articles/s41598-020-75062-0/
Oncogene paper, Mutational Signatures Operative in Bladder Cancer: https://www.nature.com/articles/s41388-017-0099-6
1 2 3 4 5 | x <- mutSignatures:::getTestRunArgs("extractXvarlinkData")
y <- mutSignatures:::extractXvarlinkData(xvarLink_data = x)
y
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