Description Usage Arguments Details Value Author(s) References Examples
View source: R/s03_all_functions.R
Remove entries corresponding to non-SNV, such as insertions and deletions.
1 | filterSNV(dataSet, seq_colNames)
|
dataSet |
data.frame including variant information |
seq_colNames |
character vector with the names of the columns storing variant data |
This function is part of the user-interface set of tools included in mutSignatures. This is an exported function.
a filtered data.frame only including SNVs
Damiano Fantini, damiano.fantini@gmail.com
More information and examples about mutational signature analysis can be found here:
GitHub Repo: https://github.com/dami82/mutSignatures/
More info and examples about the mutSignatures R library: https://www.data-pulse.com/dev_site/mutsignatures/
Sci Rep paper, introducing mutS: https://www.nature.com/articles/s41598-020-75062-0/
Oncogene paper, Mutational Signatures Operative in Bladder Cancer: https://www.nature.com/articles/s41388-017-0099-6
1 2 3 4 5 6 7 | x <- mutSignatures:::getTestRunArgs("filterSNV")
nrow(x)
y <- mutSignatures::filterSNV(dataSet = x,
seq_colNames = c("REF", "ALT"))
nrow(y)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.