Perform a final Stability check comparing the results from all iterations of the analysis.
evaluateStability(wall, hall, params)
numeric matrix including the w results from all the iterations of the analysis
numeric matrix including the h results from all the iterations of the analysis
list including all the parameters required for running tha analysis
The function evaluates the results from all iterations by performing a silhouette check. A silhouette plot will also be plotted. This is one of the core functions included in the original mutSignatures R library, and in the WTSI MATLAB framework. This is an internal function.
list including all results from the stability checks. This includes the most likely signatures (cen-troids) and exposures. All information for plotting the silhoueette plot will also be returned.
Damiano Fantini, email@example.com
More information and examples about mutational signature analysis can be found here:
GitHub Repo: https://github.com/dami82/mutSignatures/
More info and examples about the mutSignatures R library: https://www.data-pulse.com/dev_site/mutsignatures/
Sci Rep paper, introducing mutS: https://www.nature.com/articles/s41598-020-75062-0/
Oncogene paper, Mutational Signatures Operative in Bladder Cancer: https://www.nature.com/articles/s41388-017-0099-6
WTSI framework: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3588146/
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