revCompl: Compute Reverse Complement sequences.

In mutSignatures: Decipher Mutational Signatures from Somatic Mutational Catalogs

Description

Transform a DNA sequence into its reverse-complement sequence. ALternatively, only the reverse sequence (or only the complement) can be returned.

Usage

revCompl(DNAseq, rev = TRUE, compl = TRUE)

Arguments

DNAseq	character vector of DNA sequences
rev	logical, shall the reverse sequence be computed
compl	logical, shall the complementary sequence be computed

Details

This function is part of the user-interface set of tools included in mutSignatures. This is an exported function.

Value

a character vector including transformed DNA sequences

Author(s)

Damiano Fantini, [e-mail]

References

More information and examples about mutational signature analysis can be found here:

1. GitHub Repo: https://github.com/dami82/mutSignatures/

2. More info and examples about the mutSignatures R library: https://www.data-pulse.com/dev_site/mutsignatures/

3. Sci Rep paper, introducing mutS: https://www.nature.com/articles/s41598-020-75062-0/

4. Oncogene paper, Mutational Signatures Operative in Bladder Cancer: https://www.nature.com/articles/s41388-017-0099-6

Examples

A <- c("TAACCG", "CTCGA", "CNNA")
mutSignatures::revCompl(A)

mutSignatures documentation built on Nov. 9, 2020, 9:06 a.m.