Files in oppr

Optimal Project Prioritization

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/RcppExports.R R/project_cost_effectiveness.R R/add_manual_targets.R R/objectives.R R/add_gurobi_solver.R R/ScalarParameter-proto.R R/show.R R/simulate_ppp_data.R R/OptimizationProblem-methods.R R/Parameter-proto.R R/add_max_phylo_div_objective.R R/add_heuristic_solver.R R/add_feature_weights.R R/branch_matrix.R R/internal.R R/add_lpsolveapi_solver.R R/Target-proto.R R/print.R R/add_rsymphony_solver.R R/Id.R R/project_names.R R/solvers.R R/number_of_actions.R R/new_optimization_problem.R R/Weight-proto.R R/MiscParameter-proto.R R/add_default_solver.R R/constraints.R R/solution_statistics.R R/add_binary_decisions.R R/parameters.R R/add_locked_in_constraints.R R/plot_feature_persistence.R R/tbl_df.R R/data.R R/add_lpsymphony_solver.R R/Solver-proto.R R/solve.R R/weights.R R/ArrayParameter-proto.R R/add_random_solver.R R/targets.R R/number_of_features.R R/predefined_optimization_problem.R R/Parameters-proto.R R/problem.R R/add_max_targets_met_objective.R R/magrittr-operators.R R/add_relative_targets.R R/decisions.R R/action_names.R R/plot.R R/misc.R R/star_phylogeny.R R/pproto.R R/ProjectProblem-proto.R R/number_of_projects.R R/feature_names.R R/ProjectModifier-proto.R R/rake_phylogeny.R R/package.R R/compile.R R/replacement_costs.R R/Collection-proto.R R/add_manual_locked_constraints.R R/waiver.R R/Decision-proto.R R/zzz.R R/Objective-proto.R R/simulate_ptm_data.R R/plot_phylo_persistence.R R/add_max_richness_objective.R R/add_locked_out_constraints.R R/add_min_set_objective.R R/OptimizationProblem-proto.R R/add_absolute_targets.R R/Constraint-proto.R

src/optimization_problem.h

src/Makevars.win

src/Makevars

src/rcpp_branch_matrix.cpp

src/functions.cpp

src/RcppExports.cpp

src/package.h

src/rcpp_branch_order.cpp

src/rcpp_apply_max_phylo_div_objective.cpp

src/rcpp_funded_projects.cpp

src/rcpp_apply_min_set_objective.cpp

src/init.c

src/rcpp_random_solution.cpp

src/rcpp_apply_max_targets_met_objective.cpp

src/rcpp_heuristic_solution.cpp

src/rcpp_add_raw_data.cpp

src/rcpp_apply_locked_constraints.cpp

src/optimization_problem.cpp

src/rcpp_apply_feature_weights.cpp

src/rcpp_apply_decisions.cpp

src/rcpp_evaluate.cpp

src/functions.h

inst/CITATION

inst/doc/oppr.Rmd

inst/doc/oppr.html

inst/extdata/simulate_data.R

build/vignette.rds

tests/testthat.R tests/testthat/test_add_min_set_objective.R tests/testthat/test_internal_rcpp.R tests/testthat/test_add_manual_targets.R tests/testthat/test_add_relative_targets.R tests/testthat/test_add_max_richness_objective.R tests/testthat/test_add_max_targets_met_objective.R tests/testthat/test_Id.R tests/testthat/test_Waiver.R tests/testthat/test_citation.R tests/testthat/test_data.R tests/testthat/test_parameters.R tests/testthat/test_plot_phylo_persistence.R tests/testthat/test_simulate_ptm_data.R tests/testthat/test_branch_matrix.R tests/testthat/test_plot.R tests/testthat/test_solvers.R tests/testthat/test_replacement_costs.R tests/testthat/test_star_phylogeny.R tests/testthat/test_problem.R tests/testthat/test_add_absolute_targets.R tests/testthat/test_add_max_phylo_div_objective.R tests/testthat/test_add_locked_in_constraints.R tests/testthat/test_decisions.R tests/testthat/test_OptimizationProblem.R tests/testthat/test_add_locked_out_constraints.R tests/testthat/test_project_cost_effectiveness.R tests/testthat/test_simulate_ppp_data.R tests/testthat/test_as_Matrix.R tests/testthat/test_pproto.R tests/testthat/test_rake_phylogeny.R tests/testthat/helper_functions.R tests/testthat/test_add_feature_weights.R tests/testthat/test_add_random_solver.R tests/testthat/test_plot_feature_persistence.R

vignettes/references.bib

vignettes/reference-style.csl

vignettes/oppr.Rmd

data/sim_actions.rda

data/sim_projects.rda

data/sim_tree.rda

data/sim_features.rda

man/array_parameters.Rd man/add_min_set_objective.Rd man/add_locked_in_constraints.Rd man/MiscParameter-class.Rd man/compile.Rd man/OptimizationProblem-class.Rd man/tibble-methods.Rd man/OptimizationProblem-methods.Rd man/feature_names.Rd man/add_binary_decisions.Rd man/add_lsymphony_solver.Rd man/Constraint-class.Rd man/weights.Rd man/pproto.Rd man/plot.ProjectProblem.Rd man/as.Rd man/number_of_actions.Rd man/ProjectModifier-class.Rd man/simulate_ptm_data.Rd man/objectives.Rd man/solvers.Rd man/add_default_solver.Rd man/misc_parameter.Rd man/as.list.Rd man/matrix_parameters.Rd man/number_of_features.Rd man/add_manual_locked_constraints.Rd man/add_relative_targets.Rd man/solve.Rd man/new_waiver.Rd man/replacement_costs.Rd man/add_absolute_targets.Rd man/solution_statistics.Rd man/constraints.Rd man/plot_feature_persistence.Rd man/new_id.Rd man/ArrayParameter-class.Rd man/add_locked_out_constraints.Rd man/add_heuristic_solver.Rd man/add_feature_weights.Rd man/Target-class.Rd man/branch_matrix.Rd man/oppr.Rd man/add_max_phylo_div_objective.Rd man/project_cost_effectiveness.Rd man/targets.Rd man/pipe.Rd man/problem.Rd man/add_rsymphony_solver.Rd man/ProjectProblem-class.Rd man/print.Rd man/plot_phylo_persistence.Rd man/number_of_projects.Rd man/simulate_ppp_data.Rd man/new_optimization_problem.Rd man/Objective-class.Rd man/show.Rd man/tee.Rd man/Parameters-class.Rd man/add_manual_targets.Rd man/action_names.Rd man/Collection-class.Rd man/parameters.Rd man/add_gurobi_solver.Rd man/add_max_targets_met_objective.Rd man/Weight-class.Rd man/add_max_richness_objective.Rd man/Decision-class.Rd man/ScalarParameter-class.Rd man/is.Rd man/project_names.Rd man/Solver-class.Rd man/sim_data.Rd man/add_lpsolveapi_solver.Rd man/scalar_parameters.Rd man/decisions.Rd man/add_random_solver.Rd man/Parameter-class.Rd

man/figures/README-readme-plot-1.png

oppr documentation built on Sept. 8, 2022, 5:07 p.m.