dat2fasta: Convert and Save sequence data frame to fasta file
In phylotools: Phylogenetic Tools for Eco-Phylogenetics

Description Usage Arguments Details Value Author(s) References See Also Examples

Convert and Save sequence data frame to fasta file.

1	dat2fasta(dat, outfile = "out.fasta")

`dat`	data frame by `read.phylip` or `read.fasta`
`outfile`	a character string, representing the name of the fasta file to be generated

The column of the data frame must be: 1. seq.name, 2. seq.text, represent the name of the sequences, the content of the sequence, eg. ATCGGGAAC.

This is a routine without return value.

Jinlong Zhang <jinlongzhang01@gmail.com>

http://www.genomatix.de/online_help/help/sequence_formats.html

read.fasta,read.phylip

cat(
">seq_2", "GTCTTATAAGAAAGAATAAGAAAG--AAATACAAA-------AAAAAAGA",
">seq_3", "GTCTTATAAGAAAGAAATAGAAAAGTAAAAAAAAA-------AAAAAAAG",
">seq_5", "GACATAAGACATAAAATAGAATACTCAATCAGAAACCAACCCATAAAAAC",
">seq_8", "ATTCCAAAATAAAATACAAAAAGAAAAAACTAGAAAGTTTTTTTTCTTTG",
">seq_9", "ATTCTTTGTTCTTTTTTTTCTTTAATCTTTAAATAAACCTTTTTTTTTTA",
file = "trn1.fasta", sep = "\n")

res <- read.fasta("trn1.fasta")
dat2fasta(res)
unlink("trn1.fasta")
unlink("out.fasta")