get.phylip.name: get the names of sequences from a PHYLIP file
In phylotools: Phylogenetic Tools for Eco-Phylogenetics

Description Usage Arguments Details Value Author(s) See Also Examples

get the names of sequences from a PHYLIP file.

1	get.phylip.name(infile, clean_name = FALSE)

`infile`	character representing the name or path of the phylip file.
`clean_name`	logical, representing cleaning of the names will be performed.

Punctuation characters and white space be replaced by "_". Definition of Punctuation characters can be found at regex.

a character vector of the names of the sequences

Jinlong Zhang <jinlongzhang01@gmail.com>

read.phylip, regex

  cat("6 22",
  "seq_1    --TTACAAATTGACTTATTATA",
  "seq_2    GATTACAAATTGACTTATTATA",
  "seq_3    GATTACAAATTGACTTATTATA",
  "seq_5    GATTACAAATTGACTTATTATA",
  "seq_8    GATTACAAATTGACTTATTATA",
  "seq_10   ---TACAAATTGAATTATTATA",
  file = "matk.phy", sep = "\n")
get.phylip.name("matk.phy")
unlink("matk.phy")