poppr
Genetic Analysis of Populations with Mixed Reproduction

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poppr: Genetic Analysis of Populations with Mixed Reproduction
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API for poppr
Genetic Analysis of Populations with Mixed Reproduction

Global functions
$,bootgen-method Man page
%>% Man page
.Ia.Rd Source code
.PA.Ia.Rd Source code
.PA.pairwise.differences Source code
.all.shuffler Source code
.both.shuff Source code
.clonecorrector Source code
.ia Source code
.last.value Source code
.locus.shuffler Source code
.onAttach Source code
.onLoad Source code
.onUnload Source code
.permut.shuff Source code
.sampling Source code
Aeut Man page
MLG Man page
MLG-class Man page
MLG2df Man page
MLG2df,MLG-method Man page
Math,MLG-method Man page
Math2,MLG-method Man page
Ops,MLG,ANY-method Man page
Pinf Man page
Pram Man page
Summary,MLG-method Man page
[,MLG,ANY,ANY,ANY-method Man page
[,bootgen,ANY,ANY,ANY-method Man page
[,bruvomat,ANY,ANY,ANY-method Man page
[,genclone,ANY,ANY,ANY-method Man page
[,snpclone,ANY,ANY,ANY-method Man page
[<-,MLG,ANY,ANY,ANY-method Man page
aboot Man page Source code
adjustcurve Source code
amova Man page
as.genambig Man page Source code
as.genambig,genind-method Man page
as.genclone Man page Source code
as.genclone,genind-method Man page
as.snpclone Man page Source code
as.snpclone,genlight-method Man page
bias.ia Source code
bitwise.dist Man page Source code
bitwise.ia Man page Source code
boot.ia Man page Source code
bootgen-class Man page
bootgen2genind Man page Source code
bootgen2genind,bootgen-method Man page
bootstrap Man page
bruvo.between Man page Source code
bruvo.boot Man page Source code
bruvo.dist Man page Source code
bruvo.msn Man page Source code
bruvomat-class Man page
clonecorrect Man page Source code
consistent_replen Source code
cutoff Man page
cutoff,MLG-method Man page
cutoff<- Man page
cutoff<-,MLG-method Man page
cutoff_predictor Man page Source code
dim,bootgen-method Man page
dim,bruvomat-method Man page
diss.dist Man page Source code
distalgo Man page
distalgo,MLG-method Man page
distalgo<- Man page
distalgo<-,MLG-method Man page
distargs Man page
distargs,MLG-method Man page
distargs<- Man page
distargs<-,MLG-method Man page
distenv Man page
distenv,MLG-method Man page
distenv<- Man page
distenv<-,MLG-method Man page
distname Man page
distname,MLG-method Man page
distname<- Man page
distname<-,MLG-method Man page
diversity_boot Man page Source code
diversity_ci Man page Source code
diversity_stats Man page Source code
duplicated,MLG-method Man page
edwards.dist Man page Source code
filter_at_threshold Source code
filter_stats Man page Source code
final Source code
fix_replen Man page Source code
genclone Man page
genclone-class Man page
genclone2genind Man page Source code
genclone2genind,genclone-method Man page
genind2genalex Man page Source code
genotype_curve Man page Source code
getfile Man page Source code
greycurve Man page Source code
hier_incompatible_warning Source code
ia Man page Source code
imsn Man page Source code
incomp Man page Source code
info_table Man page Source code
informloci Man page Source code
initialize,MLG-method Man page
initialize,bootgen-method Man page
initialize,bruvomat-method Man page
initialize,genclone-method Man page
initialize,snpclone-method Man page
is.clone Man page Source code
is.genclone Man page Source code
is.snpclone Man page Source code
jack.ia Man page Source code
length,MLG-method Man page
levels,MLG-method Man page
levels<-,MLG-method Man page
locus_table Man page Source code
make_edge_width Source code
make_haplotypes Man page Source code
make_haplotypes,ANY-method Man page
make_haplotypes,genclone-method Man page
make_haplotypes,genind-method Man page
make_haplotypes,genlight-method Man page
make_haplotypes,snpclone-method Man page
make_haplotypes_genind Source code
make_haplotypes_genlight Source code
mismatched_repeat_length_warning Source code
missing_correction Source code
missing_messenger Source code
missingno Man page Source code
mlg Man page Source code
mlg.crosspop Man page Source code
mlg.filter Man page Source code
mlg.filter,genclone-method Man page
mlg.filter,genind-method Man page
mlg.filter,genlight-method Man page
mlg.filter,snpclone-method Man page
mlg.filter.internal Source code
mlg.filter<- Man page
mlg.filter<-,genclone-method Man page
mlg.filter<-,genind-method Man page
mlg.filter<-,genlight-method Man page
mlg.filter<-,snpclone-method Man page
mlg.id Man page Source code
mlg.matrix Source code
mlg.table Man page Source code
mlg.vector Man page Source code
mlg_sub_warning Source code
mll Man page Source code
mll,genclone-method Man page
mll,genind-method Man page
mll,genlight-method Man page
mll,snpclone-method Man page
mll.custom Man page Source code
mll.custom,genclone-method Man page
mll.custom,snpclone-method Man page
mll.custom.internal Source code
mll.custom<- Man page
mll.custom<-,genclone-method Man page
mll.custom<-,snpclone-method Man page
mll.gen.internal Source code
mll.internal Source code
mll.levels Man page Source code
mll.levels,genclone-method Man page
mll.levels,snpclone-method Man page
mll.levels.internal Source code
mll.levels<- Man page
mll.levels<-,genclone-method Man page
mll.levels<-,snpclone-method Man page
mll.reset Man page Source code
mll.reset,genclone-method Man page
mll.reset,snpclone-method Man page
mll.reset.internal Source code
mll<- Man page
mll<-,genclone-method Man page
mll<-,snpclone-method Man page
monpop Man page
msn.bruvo Man page
msn.poppr Man page
msn_constructor Source code
multiploid_string Source code
negative_branch_warning Source code
nei.dist Man page Source code
nmll Man page Source code
nmll,genclone-method Man page
nmll,genind-method Man page
nmll,genlight-method Man page
nmll,snpclone-method Man page
non_ssr_data_warning Source code
not_euclid_msg Source code
old2new_genclone Man page Source code
old_Pinf Man page
old_partial_clone Man page
option_deprecated Source code
pair.ia Man page Source code
pair_diffs Source code
pair_ia_internal Source code
pair_matrix Source code
partial_clone Man page
percent_missing Source code
pgen Man page Source code
plot.ialist Source code
plot.pairia Source code
plot_filter_stats Man page Source code
plot_poppr_msn Man page Source code
poppr Man page Source code
poppr-package Man page
poppr.all Man page Source code
poppr.amova Man page Source code
poppr.msn Man page Source code
poppr.plot Man page Source code
poppr_has_parallel Man page Source code
poppr_message Source code
popsub Man page Source code
prevosti.dist Man page
print,genclone-method Man page
print.amova Source code
print.ialist Source code
print.locustable Source code
print.pairia Source code
print.popprtable Source code
private_alleles Man page Source code
process_file Source code
provesti.dist Man page Source code
psex Man page Source code
rare_allele_correction Man page
read.genalex Man page Source code
recode_polyploids Man page Source code
repeat_length_warning Source code
rerange Source code
resample.ia Man page Source code
reynolds.dist Man page Source code
rogers.dist Man page Source code
rraf Man page Source code
rrmlg Man page Source code
run.jack Source code
samp.ia Man page Source code
show,MLG-method Man page
show,genclone-method Man page
show,snpclone-method Man page
shufflepop Man page Source code
snpclone Man page
snpclone-class Man page
split_gen Source code
sub_index Source code
test_replen Man page Source code
trimmed_repeats_warning Source code
uninformative_loci_message Source code
unique,MLG,ANY-method Man page
unique,MLG-method Man page
unmatched_loci_warning Source code
unmatched_pops_warning Source code
update_edge_scales Source code
upgma Man page
valid.genclone Source code
visible Man page
visible,MLG-method Man page
visible<- Man page
visible<-,MLG-method Man page
win.ia Man page Source code
poppr documentation built on Aug. 24, 2025, 1:09 a.m.

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